RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA751877", tax_phylum = "Negarnaviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 3 ✖

tax_phylum 1

  • Negarnaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA751877 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18577901 18577901 PRJNA751877_P_NODE_14635_length_301_cov_1.688596_g14513_i0 PRJNA751877 14635 301 1.688596 5.08267396 Morbillivirus caprinae 3052343 Viruses Viruses 556 4.87e-154   NTclustered gi|2308317032|gb|MZ388426.1| 2593991 g14513 i0 100 99.9202657807309 301 0 100 0 1 301 7644 7344 Peste des petits ruminants virus isolate Vero130, complete genome blastn 30076 556 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Morbillivirus Morbillivirus caprinae
19853699 19853699 PRJNA751877_P_NODE_796_length_807_cov_3.153951_g689_i0 PRJNA751877 796 807 3.153951 25.45238457 Morbillivirus caprinae 3052343 Viruses Viruses 1491 0   NTclustered gi|2308317032|gb|MZ388426.1| 2593991 g689 i0 100 99.9938042131351 807 0 100 0 1 807 8688 7882 Peste des petits ruminants virus isolate Vero130, complete genome blastn 80695 1491 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Morbillivirus Morbillivirus caprinae
21129134 21129134 PRJNA751877_P_NODE_5117_length_432_cov_1.707521_g4995_i0 PRJNA751877 5117 432 1.707521 7.37649072 Morbillivirus caprinae 3052343 Viruses Viruses 798 0   NTclustered gi|2308317032|gb|MZ388426.1| 2593991 g4995 i0 100 99.9953703703704 432 0 100 0 1 432 9123 8692 Peste des petits ruminants virus isolate Vero130, complete genome blastn 43198 798 1 Viruses   Orthornavirae Negarnaviricota Monjiviricetes Mononegavirales Paramyxoviridae Morbillivirus Morbillivirus caprinae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;