RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA751877" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA751877 · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6304121 6304121 PRJNA751877_P_NODE_15625_length_293_cov_1.018182_g15503_i0 PRJNA751877 15625 293 1.018182 2.98327326 Acanthamoeba 5754 Discosea other_Eukaryota 542 1.32e-149   NTclustered gi|2979652|gb|AF019052.1|AF019052 5757 g15503 i0 100 100.662116040956 293 0 100 0 1 293 719 1011 Acanthamoeba polyphaga Panola Mountain 18S ribosomal RNA gene, partial sequence blastn 29494 542 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba polyphaga
7104974 7104974 PRJNA751877_P_NODE_1886_length_598_cov_1.045714_g1765_i0 PRJNA751877 1886 598 1.045714 6.25336972 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 308 2.3499999999999995e-96   NR XP_004337289.1 1257118 g1765 i0 75.4 0.998327759197324 199 49 99.8 0 597 1 116 314 XP_004337289.1 eukaryotic translation elongation factor 2, putative [Acanthamoeba castellanii str. Neff] diamond 597 308 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
8379466 8379466 PRJNA751877_P_NODE_13227_length_314_cov_1.917012_g13105_i0 PRJNA751877 13227 314 1.917012 6.01941768 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 215 3.54e-51   NTclustered gi|470442906|ref|XM_004339540.1| 1257118 g13105 i0 84.545 30.4745222929936 220 30 69 4 1 218 85 302 Acanthamoeba castellanii str. Neff 60S ribosomal protein, putative (ACA1_063390), partial mRNA blastn 9569 215 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13480429 13480429 PRJNA751877_P_NODE_6371_length_402_cov_1.401216_g6249_i0 PRJNA751877 6371 402 1.401216 5.63288832 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 551 3.119999999999999e-152   NTclustered gi|300078498|gb|GU001160.1| 5755 g6249 i0 92.138 15.547263681592 407 7 97 15 1 388 5911 5511 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6250 551 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22877690 22877690 PRJNA751877_P_NODE_19098_length_271_cov_1.166667_g18976_i0 PRJNA751877 19098 271 1.166667 3.16166757 Acanthamoeba 5754 Discosea other_Eukaryota 501 2.05e-137   NTclustered gi|2756360496|gb|PQ002562.1| 5756 g18976 i0 100 99.9446494464945 271 0 100 0 1 271 606 876 Acanthamoeba sp. isolate PHAS18-2 small subunit ribosomal RNA gene, partial sequence blastn 27085 501 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
26735843 26735843 PRJNA751877_P_NODE_13681_length_310_cov_1.299578_g13559_i0 PRJNA751877 13681 310 1.299578 4.0286918 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 99.8 3.04e-24   NR XP_004347153.1 1257118 g13559 i0 49.5 0.996774193548387 103 51 99.7 1 1 309 36 137 XP_004347153.1 EF hand domain containing protein [Acanthamoeba castellanii str. Neff] diamond 309 99.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27442266 27442266 PRJNA751877_P_NODE_20683_length_261_cov_1.228723_g20561_i0 PRJNA751877 20683 261 1.228723 3.20696703 root 1 Root_unresolved Root_unresolved 78.6 7.08e-16   NR XP_004352755.1 1257118 g20561 i0 57.9 5.71264367816092 76 29 85.1 2 259 38 106 180 XP_004352755.1 peptidylprolyl cis-trans isomerase, FKBP-type domain containing protein [Acanthamoeba castellanii str. Neff] diamond 1491 78.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28884342 28884342 PRJNA751877_P_NODE_23508_length_250_cov_0.870056_g23386_i0 PRJNA751877 23508 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 70.9 7.93e-13   NR XP_004341132.1 1257118 g23386 i0 40 0.9 75 45 90 0 236 12 28 102 XP_004341132.1 AP3 complex beta3B subunit [Acanthamoeba castellanii str. Neff] diamond 225 70.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30536643 30536643 PRJNA751877_P_NODE_11553_length_331_cov_0.914729_g11431_i0 PRJNA751877 11553 331 0.914729 3.02775299 root 1 Root_unresolved Root_unresolved 97.8 4.78e-21   NR XP_004339738.1 1257118 g11431 i0 48 3.47129909365559 98 47 88.8 1 37 330 346 439 XP_004339738.1 ammonium transporter, putative [Acanthamoeba castellanii str. Neff] diamond 1149 98.6 0.991886409736308 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30589801 30589801 PRJNA751877_P_NODE_18473_length_275_cov_1.346535_g18351_i0 PRJNA751877 18473 275 1.346535 3.70297125 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 118 1.63e-28   NR XP_004341947.1 1257118 g18351 i0 63.7 0.992727272727273 91 32 99.3 1 274 2 565 654 XP_004341947.1 gelation factor, putative [Acanthamoeba castellanii str. Neff] diamond 273 118 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32012648 32012648 PRJNA751877_P_NODE_16958_length_284_cov_1.459716_g16836_i0 PRJNA751877 16958 284 1.459716 4.14559344 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 56.6 7.54e-7   NR XP_004337645.1 1257118 g16836 i0 36.4 1.64788732394366 77 49 81.3 0 36 266 14 90 XP_004337645.1 PB1 domain containing protein [Acanthamoeba castellanii str. Neff] diamond 468 56.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;