RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA751877", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA751877 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8853119 8853119 PRJNA751877_P_NODE_17447_length_281_cov_1.480769_g17325_i0 PRJNA751877 17447 281 1.480769 4.16096089 Pseudomonadati 3379134 Bacteria Bacteria 520 5.909999999999999e-143   NTclustered gi|1226876681|gb|CP022559.1| 197 g17325 i0 100 100 281 0 100 0 1 281 700959 701239 Campylobacter jejuni strain 11168H/araE chromosome, complete genome blastn 28100 520 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
20326753 20326753 PRJNA751877_P_NODE_29276_length_242_cov_0.911243_g29154_i0 PRJNA751877 29276 242 0.911243 2.20520806 Nautiliaceae 224467 Bacteria Bacteria 95.3 3.57e-15   NTclustered gi|1666442357|gb|CP040463.1| 391592 g29154 i0 93.651 5.41735537190083 63 4 26 0 136 198 677831 677893 Caminibacter mediatlanticus TB-2 chromosome, complete genome blastn 1311 95.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter mediatlanticus
30115867 30115867 PRJNA751877_P_NODE_4312_length_456_cov_1.407311_g4190_i0 PRJNA751877 4312 456 1.407311 6.41733816 Desulfurellales bacterium 2482794 Bacteria Bacteria 77.8 1.34e-15   NR TXH47048.1 2482794 g4190 i0 71.4 0.625 49 14 32.2 0 165 19 1 49 TXH47048.1 MAG: hypothetical protein E6Q97_28050, partial [Desulfurellales bacterium] diamond 285 77.8 1 Bacteria   Pseudomonadati Campylobacterota Desulfurellia Desulfurellales     Desulfurellales bacterium
32234410 32234410 PRJNA751877_P_NODE_7898_length_375_cov_1.185430_g7776_i0 PRJNA751877 7898 375 1.18543 4.4453625 Helicobacter sp. 12S 218 Bacteria Bacteria 50.8 2.15e-4   NR WP_095224823.1 1476199 g7776 i0 31.5 0.712 89 61 71.2 0 11 277 169 257 WP_095224823.1 glycosyltransferase family 87 protein [Helicobacter sp. 12S02634-8] diamond 267 50.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter sp. 12S02634-8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;