RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA751877", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 7 ✖

tax_kingdom 1

  • Pseudomonadati · 7 ✖

bioproject 1

  • PRJNA751877 · 7 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
12205882 12205882 PRJNA751877_P_NODE_25450_length_247_cov_0.885057_g25328_i0 PRJNA751877 25450 247 0.885057 2.18609079 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 132 7.39e-35   NR HEX4771723.1 2212468 g25328 i0 78 0.995951417004049 82 18 99.6 0 1 246 19 100 HEX4771723.1 folylpolyglutamate synthase/dihydrofolate synthase family protein [Bryobacteraceae bacterium] diamond 246 132 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
28442534 28442534 PRJNA751877_P_NODE_20046_length_265_cov_1.369792_g19924_i0 PRJNA751877 20046 265 1.369792 3.6299488 Acidobacteriota bacterium 1978231 Bacteria Bacteria 41.2 0.0443   NR PYT09682.1 1978231 g19924 i0 39.1 0.724528301886792 64 25 60 3 51 209 39 99 PYT09682.1 MAG: hypothetical protein DMF49_01420, partial [Acidobacteriota bacterium] diamond 192 41.2 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
28568615 28568615 PRJNA751877_P_NODE_28347_length_243_cov_0.905882_g28225_i0 PRJNA751877 28347 243 0.905882 2.20129326 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 114 7.53e-29   NR HEY8563530.1 2283092 g28225 i0 73.8 1.97530864197531 80 21 98.8 0 2 241 135 214 HEY8563530.1 hypothetical protein [Pyrinomonadaceae bacterium] diamond 480 114 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium
29389740 29389740 PRJNA751877_P_NODE_24349_length_249_cov_0.875000_g24227_i0 PRJNA751877 24349 249 0.875 2.17875 Vicinamibacteria bacterium 2793154 Bacteria Bacteria 112 2.25e-27   NR HXV60015.1 2793154 g24227 i0 58 0.975903614457831 81 34 97.6 0 247 5 57 137 HXV60015.1 exo-alpha-sialidase [Vicinamibacteria bacterium] diamond 243 112 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria       Vicinamibacteria bacterium
29799972 29799972 PRJNA751877_P_NODE_29211_length_242_cov_0.911243_g29089_i0 PRJNA751877 29211 242 0.911243 2.20520806 Blastocatellia bacterium 2052146 Bacteria Bacteria 42.7 0.0208   NR HKF54674.1 2052146 g29089 i0 42 0.619834710743802 50 29 62 0 13 162 50 99 HKF54674.1 GNAT family N-acetyltransferase [Blastocatellia bacterium] diamond 150 42.7 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia       Blastocatellia bacterium
29926551 29926551 PRJNA751877_P_NODE_10311_length_343_cov_2.700000_g10189_i0 PRJNA751877 10311 343 2.7 9.261 Acidobacteriota bacterium 1978231 Bacteria Bacteria 57.8 6.24e-7   NR QQS48225.1 1978231 g10189 i0 50.9 0.463556851311953 53 25 46.4 1 234 76 259 310 QQS48225.1 MAG: hypothetical protein IPM66_06180 [Acidobacteriota bacterium] diamond 159 57.8 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
31064070 31064070 PRJNA751877_P_NODE_2095_length_575_cov_1.782869_g1974_i0 PRJNA751877 2095 575 1.782869 10.25149675 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 111 1.4199999999999999e-25   NR HYY97516.1 2283092 g1974 i0 40.8 0.76695652173913 147 83 76.7 2 132 572 46 188 HYY97516.1 ABC transporter substrate-binding protein [Pyrinomonadaceae bacterium] diamond 441 111 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;