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contig_metadata

12 rows where bioproject = "PRJNA751877", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 12 ✖

tax_clade 1

  • Sar · 12 ✖

bioproject 1

  • PRJNA751877 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
726490 726490 PRJNA751877_P_NODE_2921_length_516_cov_2.085779_g2799_i0 PRJNA751877 2921 516 2.085779 10.76261964 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 154 1.35e-32   NTclustered gi|669145241|ref|XM_008609961.1| 1156394 g2799 i0 75.51 30.5910852713178 343 68 65 14 92 426 452 118 Saprolegnia diclina VS20 50S ribosomal protein L22e mRNA blastn 15785 154 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
2002597 2002597 PRJNA751877_P_NODE_5542_length_420_cov_2.293948_g5420_i0 PRJNA751877 5542 420 2.293948 9.6345816 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 346 1.66e-90   NTclustered gi|2795040529|ref|XM_067944818.1| 4785 g5420 i0 81.971 84.697619047619 416 67 98 6 8 419 426 15 Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA blastn 35573 346 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
3277877 3277877 PRJNA751877_P_NODE_3123_length_505_cov_3.671296_g3001_i0 PRJNA751877 3123 505 3.671296 18.5400448 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 204 1.29e-47   NTclustered gi|2794929698|ref|XM_067885402.1| 164328 g3001 i0 77.778 42.6376237623762 342 69 67 6 140 476 368 29 Phytophthora ramorum 60S ribosomal protein L18a (KRP23_14565), partial mRNA blastn 21532 204 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
5829990 5829990 PRJNA751877_P_NODE_24385_length_249_cov_0.875000_g24263_i0 PRJNA751877 24385 249 0.875 2.17875 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 128 3.64e-25   NTclustered gi|2795026484|ref|XM_067934071.1| 4785 g24263 i0 82.877 6.37349397590361 146 21 58 3 106 249 631 488 Phytophthora cinnamomi Transketolase (IUM83_09620), partial mRNA blastn 1587 128 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
10930319 10930319 PRJNA751877_P_NODE_23769_length_249_cov_1.312500_g23647_i0 PRJNA751877 23769 249 1.3125 3.268125 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 118 3.81e-29   NR TMW64105.1 41045 g23647 i0 69.5 17.7831325301205 82 25 98.8 0 2 247 37 118 TMW64105.1 hypothetical protein Poli38472_014222 [Pythium oligandrum] diamond 4428 119 0.991596638655462 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
13480264 13480264 PRJNA751877_P_NODE_25771_length_247_cov_0.885057_g25649_i0 PRJNA751877 25771 247 0.885057 2.18609079 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 73.1 1.71e-8   NTclustered gi|2794888530|ref|XM_067886608.1| 164328 g25649 i0 92.157 0.206477732793522 51 4 21 0 145 195 471 421 Phytophthora ramorum tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 (KRP23_1938), partial mRNA blastn 51 73.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
16503255 16503255 PRJNA751877_P_NODE_27713_length_244_cov_0.900585_g27591_i0 PRJNA751877 27713 244 0.900585 2.1974274 root 1 Root_unresolved Root_unresolved 407 4.08e-109   NTclustered gi|166044630|emb|CU367539.1| 100861 g27591 i0 96.721 98.4180327868852 244 8 100 0 1 244 168 411 Aphanomyces euteiches cDNA blastn 24014 407 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
20326563 20326563 PRJNA751877_P_NODE_18256_length_276_cov_1.517241_g18134_i0 PRJNA751877 18256 276 1.517241 4.18758516 root 1 Root_unresolved Root_unresolved 488 1.6299999999999995e-133   NTclustered gi|166044608|emb|CU367517.1| 100861 g18134 i0 98.551 99.6992753623188 276 4 100 0 1 276 472 747 Aphanomyces euteiches cDNA blastn 27517 488 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
24953086 24953086 PRJNA751877_P_NODE_4900_length_438_cov_2.378082_g4778_i0 PRJNA751877 4900 438 2.378082 10.41599916 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 196 1.85e-45   NTclustered gi|301114940|ref|XM_002999194.1| 403677 g4778 i0 81.59 10.9543378995434 239 42 54 2 201 438 855 618 Phytophthora infestans T30-4 pyrophosphate-energized vacuolar membrane proton pump, putative (PITG_05615), partial mRNA blastn 4798 196 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
25426978 25426978 PRJNA751877_P_NODE_4620_length_447_cov_1.235294_g4498_i0 PRJNA751877 4620 447 1.235294 5.52176418 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 357 8.189999999999997e-94   NTclustered gi|813119301|ref|XM_012340833.1| 695850 g4498 i0 82.716 76.4093959731544 405 66 90 4 45 447 962 560 Saprolegnia parasitica CBS 223.65 hypothetical protein partial mRNA blastn 34155 359 0.994428969359331 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
29936453 29936453 PRJNA751877_P_NODE_9351_length_355_cov_1.092199_g9229_i0 PRJNA751877 9351 355 1.092199 3.87730645 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 114 9.06e-28   NR XP_067822191.1 4779 g9229 i0 57.6 27.9380281690141 92 39 77.7 0 276 1 186 277 XP_067822191.1 uncharacterized protein CCR75_008787 [Bremia lactucae] diamond 9918 114 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Bremia Bremia lactucae
30694597 30694597 PRJNA751877_P_NODE_22473_length_251_cov_0.865169_g22351_i0 PRJNA751877 22473 251 0.865169 2.17157419 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 85.9 2.83e-18   NR OWZ03480.1 4795 g22351 i0 53.4 12.2151394422311 73 34 87.3 0 25 243 42 114 OWZ03480.1 hypothetical protein PHMEG_00024782 [Phytophthora megakarya] diamond 3066 86.7 0.990772779700115 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;