RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA751877", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 4 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 4 ✖

bioproject 1

  • PRJNA751877 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27062685 27062685 PRJNA751877_P_NODE_17482_length_281_cov_1.418269_g17360_i0 PRJNA751877 17482 281 1.418269 3.98533589 Bacteria 2 Bacteria Bacteria 43.5 0.03   NR GMV05605.1 2026742 g17360 i0 36.8 3.81138790035587 87 45 83.3 4 256 23 71 156 GMV05605.1 MAG: MFS transporter [Gemmatimonadota bacterium] diamond 1071 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
28758042 28758042 PRJNA751877_P_NODE_22787_length_251_cov_0.865169_g22665_i0 PRJNA751877 22787 251 0.865169 2.17157419 Longimicrobium sp. 2029185 Bacteria Bacteria 125 1.59e-33   NR HYW13411.1 2029185 g22665 i0 73.2 1.94820717131474 82 22 98 0 6 251 100 181 HYW13411.1 SRPBCC domain-containing protein [Longimicrobium sp.] diamond 489 125 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30811077 30811077 PRJNA751877_P_NODE_6094_length_408_cov_0.964179_g5972_i0 PRJNA751877 6094 408 0.964179 3.93385032 Longimicrobium sp. 2029185 Bacteria Bacteria 46.2 0.0121   NR WP_331051909.1 2029185 g5972 i0 37.7 0.389705882352941 53 32 38.2 1 250 405 125 177 WP_331051909.1 PepSY-associated TM helix domain-containing protein [Longimicrobium sp.] diamond 159 46.2 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
32592088 32592088 PRJNA751877_P_NODE_2879_length_519_cov_2.029148_g2757_i0 PRJNA751877 2879 519 2.029148 10.53127812 Gemmatimonadota 142182 Bacteria Bacteria 57 4.05e-6   NR HLM68159.1 2029185 g2757 i0 53.2 1.11560693641618 62 28 35.8 1 519 334 208 268 HLM68159.1 DUF2382 domain-containing protein [Longimicrobium sp.] diamond 579 57 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;