RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA749559" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA749559 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28947827 28947827 PRJNA749559_P_NODE_4588_length_205_cov_0.888889_g4518_i0 PRJNA749559 4588 205 0.888889 1.82222245 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 42 0.0405   NR MBL7213919.1 2049433 g4518 i0 50 0.673170731707317 46 21 64.4 1 42 173 69 114 MBL7213919.1 PAS domain S-box protein [Desulfobacteraceae bacterium] diamond 138 42 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
31443199 31443199 PRJNA749559_P_NODE_1476_length_370_cov_1.546926_g1406_i0 PRJNA749559 1476 370 1.546926 5.7236262 Desulfomicrobium escambiense 29503 Bacteria Bacteria 45.8 0.0126   NR WP_156902618.1 29503 g1406 i0 31.7 0.997297297297297 123 69 87.6 2 343 20 139 261 WP_156902618.1 STT3 domain-containing protein [Desulfomicrobium escambiense] diamond 369 45.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfomicrobiaceae Desulfomicrobium Desulfomicrobium escambiense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;