RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA749559" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA749559 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27052863 27052863 PRJNA749559_P_NODE_4902_length_202_cov_0.907801_g4832_i0 PRJNA749559 4902 202 0.907801 1.83375802 Volvox carteri f. nagariensis 3068 Plants Plants 51.6 1.65e-5   NR XP_002948017.1 3068 g4832 i0 39.1 0.95049504950495 64 39 95 0 5 196 192 255 XP_002948017.1 uncharacterized protein VOLCADRAFT_88209 [Volvox carteri f. nagariensis] diamond 192 51.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
29273048 29273048 PRJNA749559_P_NODE_4089_length_210_cov_1.436242_g4019_i0 PRJNA749559 4089 210 1.436242 3.0161082 Chlorophyta 3041 Plants Plants 52.8 1.76e-6   NR XP_003059180.1 564608 g4019 i0 48.5 1.9 68 30 97.1 1 209 6 18 80 XP_003059180.1 uncharacterized protein MICPUCDRAFT_49622 [Micromonas pusilla CCMP1545] diamond 399 52.8 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Mamiellaceae Micromonas Micromonas pusilla
29863172 29863172 PRJNA749559_P_NODE_4951_length_202_cov_0.907801_g4881_i0 PRJNA749559 4951 202 0.907801 1.83375802 Haematococcus lacustris 44745 Plants Plants 43.1 0.0158   NR KAJ9515922.1 44745 g4881 i0 39.6 0.787128712871287 53 32 78.7 0 201 43 106 158 KAJ9515922.1 hypothetical protein QJQ45_016906, partial [Haematococcus lacustris] diamond 159 43.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;