RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA749559" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA749559 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2475215 2475215 PRJNA749559_P_NODE_3382_length_235_cov_1.080460_g3312_i0 PRJNA749559 3382 235 1.08046 2.539081 root 1 Root_unresolved Root_unresolved 435 1.79e-117   NTclustered gi|155128|gb|J04639.1|TTHTAQP1A 271 g3312 i0 100 52.3276595744681 235 0 100 0 1 235 1419 1653 Thermus aquaticus DNA polymerase (PolI) gene blastn 12297 435 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
3277309 3277309 PRJNA749559_P_NODE_4003_length_212_cov_3.384106_g3933_i0 PRJNA749559 4003 212 3.384106 7.17430472 Thermus aquaticus 271 Bacteria Bacteria 381 2.0899999999999994e-101   NTclustered gi|939575972|gb|CP010822.1| 498848 g3933 i0 99.057 145.047169811321 212 2 100 0 1 212 45540 45329 Thermus aquaticus Y51MC23, complete genome blastn 30750 381 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
10128513 10128513 PRJNA749559_P_NODE_1428_length_377_cov_1.417722_g1358_i0 PRJNA749559 1428 377 1.417722 5.34481194 Bacteria 2 Bacteria Bacteria 647 0   NTclustered gi|155128|gb|J04639.1|TTHTAQP1A 271 g1358 i0 98.895 65.1379310344828 362 4 96 0 16 377 121 482 Thermus aquaticus DNA polymerase (PolI) gene blastn 24557 647 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus
17304038 17304038 PRJNA749559_P_NODE_2674_length_265_cov_2.872549_g2604_i0 PRJNA749559 2674 265 2.872549 7.61225485 Thermus aquaticus 271 Bacteria Bacteria 481 2.61e-131   NTclustered gi|939575972|gb|CP010822.1| 498848 g2604 i0 99.62 142.739622641509 263 1 99 0 1 263 44348 44610 Thermus aquaticus Y51MC23, complete genome blastn 37826 481 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus aquaticus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;