RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA749559", tax_clade = "PVC group" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA749559 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28474032 28474032 PRJNA749559_P_NODE_4706_length_204_cov_0.895105_g4636_i0 PRJNA749559 4706 204 0.895105 1.8260142 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 61.6 3.08e-9   NR MDH7502297.1 2026799 g4636 i0 41.8 3.89705882352941 67 39 98.5 0 1 201 74 140 MDH7502297.1 slipin family protein [Verrucomicrobiota bacterium] diamond 795 61.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30210526 30210526 PRJNA749559_P_NODE_4512_length_206_cov_0.882759_g4442_i0 PRJNA749559 4512 206 0.882759 1.81848354 Pirellulaceae bacterium 2699754 Bacteria Bacteria 41.2 0.0372   NR MFN7722928.1 2699754 g4442 i0 37.5 0.58252427184466 40 25 58.3 0 124 5 28 67 MFN7722928.1 hypothetical protein [Pirellulaceae bacterium] diamond 120 41.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae   Pirellulaceae bacterium
32802392 32802392 PRJNA749559_P_NODE_4920_length_202_cov_0.907801_g4850_i0 PRJNA749559 4920 202 0.907801 1.83375802 Phycisphaerae bacterium 2026778 Bacteria Bacteria 77.8 9.75e-15   NR MFN0138167.1 2026778 g4850 i0 51.6 2.88118811881188 64 30 93.6 1 192 4 605 668 MFN0138167.1 aconitate hydratase AcnA [Phycisphaerae bacterium] diamond 582 77.8 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae       Phycisphaerae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;