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contig_metadata

16 rows where bioproject = "PRJNA745923" and tax_phylum = "Streptophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA745923 · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1198943 1198943 PRJNA745923_S_NODE_41_length_11369_cov_57.353346_g24_i1 PRJNA745923 41 11369 57.353346 6520.50190674 Tanacetum cinerariifolium 118510 Plants Plants 1025 0   NR GEZ83759.1 118510 g24 i1 52.3 0.433019614741842 1029 430 26.5 13 6972 9983 52 1044 GEZ83759.1 hypothetical protein [Tanacetum cinerariifolium] diamond 4923 1025 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
6302876 6302876 PRJNA745923_S_NODE_25285_length_192_cov_1.543624_g24953_i0 PRJNA745923 25285 192 1.543624 2.96375808 root 1 Root_unresolved Root_unresolved 52.8 0.017   NTclustered gi|2835530370|dbj|LC777197.1| 3329 g24953 i0 100 0.729166666666667 28 0 15 0 165 192 56 29 Picea abies Pa-Kumamoto-2022 PaMurD mRNA for UDP-MurNAc-L-alanyl-D-glutamate synthetase, complete cds blastn 140 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
10928975 10928975 PRJNA745923_S_NODE_8069_length_370_cov_7.810398_g7737_i0 PRJNA745923 8069 370 7.810398 28.8984726 Picea abies 3329 Plants Plants 52.8 0.035   NTclustered gi|2835530398|dbj|LC777204.1| 3329 g7737 i0 100 0.151351351351351 28 0 8 0 343 370 56 29 Picea abies Pa-Kumamoto-2022 PaPbp mRNA for penicillin-binding protein, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
12204247 12204247 PRJNA745923_S_NODE_27690_length_182_cov_1.575540_g27358_i0 PRJNA745923 27690 182 1.57554 2.8674828 Picea abies 3329 Plants Plants 52.8 0.015   NTclustered gi|2835530398|dbj|LC777204.1| 3329 g27358 i0 100 0.307692307692308 28 0 15 0 1 28 29 56 Picea abies Pa-Kumamoto-2022 PaPbp mRNA for penicillin-binding protein, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
13478684 13478684 PRJNA745923_S_NODE_33591_length_163_cov_3.600000_g33259_i0 PRJNA745923 33591 163 3.6 5.868 Ziziphus jujuba 326968 Plants Plants 52.8 0.014   NTclustered gi|2739574731|gb|CP157405.1| 326968 g33259 i0 100 0.171779141104294 28 0 17 0 33 60 10977992 10977965 Ziziphus jujuba isolate TW-2024b chromosome 03 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Rosales Rhamnaceae Ziziphus Ziziphus jujuba
16027225 16027225 PRJNA745923_S_NODE_17033_length_241_cov_5.449495_g16701_i0 PRJNA745923 17033 241 5.449495 13.13328295 Picea abies 3329 Plants Plants 54.7 0.006   NTclustered gi|2835530398|dbj|LC777204.1| 3329 g16701 i0 100 0.236514522821577 29 0 12 0 1 29 29 57 Picea abies Pa-Kumamoto-2022 PaPbp mRNA for penicillin-binding protein, complete cds blastn 57 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
16027558 16027558 PRJNA745923_S_NODE_38013_length_153_cov_0.872727_g37681_i0 PRJNA745923 38013 153 0.872727 1.33527231 Triticum aestivum 4565 Plants Plants 211 1.95e-50   NTclustered gi|300681419|emb|FN564427.1| 4565 g37681 i0 91.503 21.8954248366013 153 13 100 0 1 153 549775 549623 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0079b blastn 3350 211 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
16502006 16502006 PRJNA745923_S_NODE_9473_length_338_cov_4.433898_g9141_i0 PRJNA745923 9473 338 4.433898 14.98657524 root 1 Root_unresolved Root_unresolved 52.8 0.032   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g9141 i0 100 0.165680473372781 28 0 8 0 1 28 29 56 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
17302883 17302883 PRJNA745923_S_NODE_29294_length_176_cov_2.165414_g28962_i0 PRJNA745923 29294 176 2.165414 3.81112864 Papaver somniferum 3469 Plants Plants 52.8 0.015   NTclustered gi|1484774789|ref|XR_003324792.1| 3469 g28962 i0 100 0.159090909090909 28 0 16 0 135 162 1730 1703 PREDICTED: Papaver somniferum uncharacterized LOC113277222 (LOC113277222), ncRNA blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Ranunculales Papaveraceae Papaver Papaver somniferum
19050690 19050690 PRJNA745923_S_NODE_31775_length_168_cov_5.872000_g31443_i0 PRJNA745923 31775 168 5.872 9.86496 Glycine 3846 Plants Plants 52.8 0.014   NTclustered gi|2027490559|ref|XM_003535662.5| 3847 g31443 i0 100 0.333333333333333 28 0 17 0 131 158 1702 1675 PREDICTED: Glycine max palmitoyl-acyl carrier protein thioesterase, chloroplastic (LOC100818183), mRNA blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Glycine Glycine max
19050708 19050708 PRJNA745923_S_NODE_35_length_12554_cov_75.931260_g24_i0 PRJNA745923 35 12554 75.93126 9532.4103804 Tanacetum cinerariifolium 118510 Plants Plants 1025 0   NR GEZ83759.1 118510 g24 i0 52.3 0.392145929584196 1029 430 24 13 7623 10634 52 1044 GEZ83759.1 hypothetical protein [Tanacetum cinerariifolium] diamond 4923 1025 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Tanacetum Tanacetum cinerariifolium
21601030 21601030 PRJNA745923_S_NODE_21637_length_209_cov_4.192771_g21305_i0 PRJNA745923 21637 209 4.192771 8.76289139 root 1 Root_unresolved Root_unresolved 52.8 0.018   NTclustered gi|2835530381|dbj|LC777201.1| 3329 g21305 i0 100 0.669856459330144 28 0 13 0 1 28 29 56 Picea abies Pa-Kumamoto-2022 PaMraY mRNA for UDP-MurNAc-pentapeptide phosphotransferase, complete cds blastn 140 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
22402109 22402109 PRJNA745923_S_NODE_20998_length_213_cov_2.211765_g20666_i0 PRJNA745923 20998 213 2.211765 4.71105945 Picea abies 3329 Plants Plants 52.8 0.019   NTclustered gi|2835530398|dbj|LC777204.1| 3329 g20666 i0 100 0.262910798122066 28 0 13 0 186 213 56 29 Picea abies Pa-Kumamoto-2022 PaPbp mRNA for penicillin-binding protein, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
25425373 25425373 PRJNA745923_S_NODE_11140_length_308_cov_20.132075_g10808_i0 PRJNA745923 11140 308 20.132075 62.006791 root 1 Root_unresolved Root_unresolved 52.8 0.029   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g10808 i0 100 0.181818181818182 28 0 9 0 281 308 56 29 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
25425377 25425377 PRJNA745923_S_NODE_11220_length_307_cov_4.189394_g10888_i0 PRJNA745923 11220 307 4.189394 12.86143958 root 1 Root_unresolved Root_unresolved 52.8 0.029   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g10888 i0 100 0.182410423452769 28 0 9 0 280 307 56 29 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
29799954 29799954 PRJNA745923_S_NODE_27151_length_184_cov_1.702128_g26819_i0 PRJNA745923 27151 184 1.702128 3.13191552 Liquidambar formosana 63359 Plants Plants 74.7 6.58e-16   NR KAK9269863.1 63359 g26819 i0 97.1 0.554347826086957 34 1 55.4 0 3 104 43 76 KAK9269863.1 hypothetical protein L1049_025436 [Liquidambar formosana] diamond 102 74.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Saxifragales Altingiaceae Liquidambar Liquidambar formosana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;