RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA745923" and tax_phylum = "Mollusca"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA745923 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7576814 7576814 PRJNA745923_S_NODE_24286_length_196_cov_7.745098_g23954_i0 PRJNA745923 24286 196 7.745098 15.18039208 root 1 Root_unresolved Root_unresolved 54.7 0.005   NTclustered gi|2170965484|dbj|LC593126.1| 148819 g23954 i0 100 0.581632653061224 29 0 15 0 1 29 29 57 Anadara broughtonii GnRH mRNA for gonadotropin releasing hormone, complete cds blastn 114 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Arcoida Arcidae Anadara Anadara broughtonii
9653169 9653169 PRJNA745923_S_NODE_23928_length_198_cov_1.787097_g23596_i0 PRJNA745923 23928 198 1.787097 3.53845206 Patella vulgata 6465 Mollusca Mollusca 54.7 0.005   NTclustered gi|2506341823|ref|XR_007683638.2| 6465 g23596 i0 100 0.287878787878788 29 0 15 0 168 196 3488 3516 PREDICTED: Patella vulgata uncharacterized LOC126829995 (LOC126829995), ncRNA blastn 57 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Patellidae Patella Patella vulgata
12204086 12204086 PRJNA745923_S_NODE_17990_length_234_cov_1.125654_g17658_i0 PRJNA745923 17990 234 1.125654 2.63403036 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.006   NTclustered gi|2913000417|dbj|AP039607.1| 145626 g17658 i0 96.875 0.273504273504274 32 1 14 0 59 90 8068736 8068705 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 26, sequence blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;