RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA745923", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

  • Metazoa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA745923 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
724933 724933 PRJNA745923_S_NODE_39121_length_151_cov_14.287037_g38789_i0 PRJNA745923 39121 151 14.287037 21.57342587 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 274 2.42e-69   NTclustered gi|56757963|gb|AY815390.1| 6182 g38789 i0 99.338 127.245033112583 151 1 100 0 1 151 2002 1852 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 19214 274 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
24951059 24951059 PRJNA745923_S_NODE_12140_length_294_cov_2.298805_g11808_i0 PRJNA745923 12140 294 2.298805 6.7584867 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 538 1.7199999999999995e-148   NTclustered gi|1124902734|gb|AY812498.2| 6182 g11808 i0 99.66 99.8265306122449 294 1 100 0 1 294 1387 1094 Schistosoma japonicum SJCHGC01615 protein mRNA, partial cds blastn 29349 538 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
27052855 27052855 PRJNA745923_S_NODE_34842_length_160_cov_1.641026_g34510_i0 PRJNA745923 34842 160 1.641026 2.6256416 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 103 4.65e-24   NR AAX28387.3 6182 g34510 i0 98.1 0.975 52 1 97.5 0 3 158 308 359 AAX28387.3 SJCHGC01615 protein, partial [Schistosoma japonicum] diamond 156 103 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum
29799953 29799953 PRJNA745923_S_NODE_21031_length_213_cov_1.694118_g20699_i0 PRJNA745923 21031 213 1.694118 3.60847134 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 60.5 2.24e-9   NR AAX25839.2 6182 g20699 i0 81.8 0.464788732394366 33 6 46.5 0 114 212 2 34 AAX25839.2 SJCHGC09516 protein, partial [Schistosoma japonicum] diamond 99 60.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;