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contig_metadata

17 rows where bioproject = "PRJNA745553" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 17 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA745553 · 17 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
724215 724215 PRJNA745553_S_NODE_24101_length_252_cov_1.290503_g23906_i0 PRJNA745553 24101 252 1.290503 3.25206756 Bursaphelenchus ussuriensis 3375378 Nematoda Nematoda 117 7.99e-22   NTclustered gi|2838470513|gb|PQ500562.1| 3375378 g23906 i0 81.169 14.3888888888889 154 22 59 6 96 244 4121 4272 Bursaphelenchus ussuriensis isolate CD4139 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 3626 117 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus ussuriensis
2000319 2000319 PRJNA745553_S_NODE_26162_length_243_cov_3.047059_g25967_i0 PRJNA745553 26162 243 3.047059 7.40435337 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 135 4.34e-36   NR XP_024506366.1 34506 g25967 i0 69.4 20.7530864197531 85 21 98.8 1 242 3 244 328 XP_024506366.1 60S ribosomal protein L3 [Strongyloides ratti] diamond 5043 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
2473965 2473965 PRJNA745553_S_NODE_1002_length_771_cov_5.206304_g883_i0 PRJNA745553 1002 771 5.206304 40.14060384 Rhabditida 6236 Nematoda Nematoda 128 1.25e-24   NTclustered gi|2547219|gb|AF023856.1|AF023856 6304 g883 i0 85.833 8.57587548638132 120 17 16 0 515 634 367 486 Meloidogyne arenaria blastn 6612 128 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Meloidogynidae Meloidogyne Meloidogyne arenaria
3275483 3275483 PRJNA745553_S_NODE_19343_length_281_cov_3.115385_g19148_i0 PRJNA745553 19343 281 3.115385 8.75423185 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.026   NTclustered gi|1557394408|emb|LR031564.1| 45931 g19148 i0 100 0.099644128113879 28 0 10 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
9652572 9652572 PRJNA745553_S_NODE_17168_length_298_cov_2.488889_g16973_i0 PRJNA745553 17168 298 2.488889 7.41688922 Pratylenchus vulnus 45931 Nematoda Nematoda 54.7 0.008   NTclustered gi|1557394408|emb|LR031564.1| 45931 g16973 i0 100 0.0973154362416107 29 0 10 0 270 298 53 25 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
12203521 12203521 PRJNA745553_S_NODE_13770_length_331_cov_6.945736_g13575_i0 PRJNA745553 13770 331 6.945736 22.99038616 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.031   NTclustered gi|1557394408|emb|LR031564.1| 45931 g13575 i0 100 0.0845921450151057 28 0 8 0 1 28 23 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
14752975 14752975 PRJNA745553_S_NODE_1472_length_706_cov_10.413902_g1332_i0 PRJNA745553 1472 706 10.413902 73.52214812 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 332 5.08e-113   NR VDP19351.1 241478 g1332 i0 75.7 13.2025495750708 206 50 87.5 0 677 60 1 206 VDP19351.1 unnamed protein product [Soboliphyme baturini] diamond 9321 333 0.996996996996997 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Dioctophymatida Soboliphymatidae Soboliphyme Soboliphyme baturini
14753365 14753365 PRJNA745553_S_NODE_8692_length_408_cov_4.540299_g8497_i0 PRJNA745553 8692 408 4.540299 18.52441992 Rhomborhabditis regina 2528157 Nematoda Nematoda 606 6.67e-169   NTclustered gi|157787505|gb|EF990726.1| 2528157 g8497 i0 94.643 96.8259803921569 392 20 96 1 18 408 1787 1396 Rhabditoides regina strain DF5012 28S large subunit ribosomal RNA gene, partial sequence blastn 39505 606 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhomborhabditis Rhomborhabditis regina
16026678 16026678 PRJNA745553_S_NODE_13853_length_330_cov_4.852140_g13658_i0 PRJNA745553 13853 330 4.85214 16.012062 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.031   NTclustered gi|1557394408|emb|LR031564.1| 45931 g13658 i0 100 0.0848484848484849 28 0 8 0 1 28 25 52 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
17302179 17302179 PRJNA745553_S_NODE_15174_length_316_cov_3.724280_g14979_i0 PRJNA745553 15174 316 3.72428 11.7687248 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.008   NTclustered gi|687022649|emb|LM525563.1| 174720 g14979 i0 96.875 0.10126582278481 32 1 10 0 188 219 610505 610474 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000008 blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
17776425 17776425 PRJNA745553_S_NODE_27734_length_234_cov_6.074534_g27539_i0 PRJNA745553 27734 234 6.074534 14.21440956 Rhabditida 6236 Nematoda Nematoda 171 5.55e-38   NTclustered gi|2437461996|gb|ON496988.1| 31243 g27539 i0 94.545 47.0042735042735 110 6 47 0 104 213 5006 4897 Globodera rostochiensis isolate Ro1-5 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 10999 172 0.994186046511628 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera rostochiensis
17776458 17776458 PRJNA745553_S_NODE_6014_length_472_cov_3.583960_g5820_i0 PRJNA745553 6014 472 3.58396 16.9162912 Rhabditida 6236 Nematoda Nematoda 135 4.4300000000000005e-27   NTclustered gi|2437461996|gb|ON496988.1| 31243 g5820 i0 88.496 12.25 113 12 24 1 175 286 5003 4891 Globodera rostochiensis isolate Ro1-5 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 5782 135 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Heteroderidae Globodera Globodera rostochiensis
19851169 19851169 PRJNA745553_S_NODE_18656_length_286_cov_1.849765_g18461_i0 PRJNA745553 18656 286 1.849765 5.2903279 Parapristionchus giblindavisi 1187980 Nematoda Nematoda 143 1.52e-29   NTclustered gi|387600374|gb|JQ677919.1| 1187980 g18461 i0 87.805 20.6748251748252 123 13 43 2 3 124 191 70 Diplogastridae gen. sp. EJR-2012 small ribosomal protein 14 mRNA, partial cds blastn 5913 143 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Parapristionchus Parapristionchus giblindavisi
24950672 24950672 PRJNA745553_S_NODE_18920_length_284_cov_2.710900_g18725_i0 PRJNA745553 18920 284 2.7109 7.698956 Diploscapter pachys 2018661 Nematoda Nematoda 68.9 9.59e-13   NR PAV56235.1 2018661 g18725 i0 67.4 1.94366197183099 46 15 48.6 0 261 124 55 100 PAV56235.1 hypothetical protein WR25_15683 [Diploscapter pachys] diamond 552 68.9 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
26873183 26873183 PRJNA745553_S_NODE_881_length_798_cov_6.798621_g769_i0 PRJNA745553 881 798 6.798621 54.25299558 root 1 Root_unresolved Root_unresolved 186 2.84e-53   NR KHN76811.1 6265 g769 i0 52.5 6.14285714285714 181 83 68 2 3 545 169 346 KHN76811.1 Malate dehydrogenase, cytoplasmic [Toxocara canis] diamond 4902 187 0.994652406417112 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Toxocaridae Toxocara Toxocara canis
27621577 27621577 PRJNA745553_S_NODE_29184_length_223_cov_4.060000_g28989_i0 PRJNA745553 29184 223 4.06 9.0538 Aphelenchoides bicaudatus 293665 Nematoda Nematoda 42.4 0.0406   NR KAI6190497.1 293665 g28989 i0 73.1 0.349775784753363 26 7 35 0 67 144 49 74 KAI6190497.1 U4/U6.U5 tri-snRNP-associated protein 1 [Aphelenchoides bicaudatus] diamond 78 42.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides bicaudatus
29484053 29484053 PRJNA745553_S_NODE_5270_length_495_cov_4.867299_g5076_i0 PRJNA745553 5270 495 4.867299 24.09313005 Caenorhabditis angaria 860376 Nematoda Nematoda 56.6 1.06e-6   NR CAI5449474.1 860376 g5076 i0 49.1 1.87272727272727 53 24 30.3 2 488 339 50 102 CAI5449474.1 unnamed protein product [Caenorhabditis angaria] diamond 927 56.6 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis angaria

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;