RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA745553" and tax_phylum = "Chlorobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA745553 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
724377 724377 PRJNA745553_S_NODE_5561_length_485_cov_2258.218447_g5367_i0 PRJNA745553 5561 485 2258.218447 10952.35946795 Candidatus Thermochlorobacter aerophilum 1868323 Bacteria Bacteria 186 9.21e-56   NR RFM23222.1 1868324 g5367 i0 71.9 8.98144329896907 121 34 74.8 0 4 366 114 234 RFM23222.1 MAG: SDR family oxidoreductase [Candidatus Thermochlorobacter aerophilum] diamond 4356 186 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Candidatus Thermochlorobacteriaceae Candidatus Thermochlorobacter Candidatus Thermochlorobacter aerophilus
4552574 4552574 PRJNA745553_S_NODE_13424_length_335_cov_35.179389_g13229_i0 PRJNA745553 13424 335 35.179389 117.85095315 Prosthecochloris sp. CIB 2401 1868325 Bacteria Bacteria 209 1.77e-49   NTclustered gi|1044515116|gb|CP016432.1| 1868325 g13229 i0 81.679 196.916417910448 262 38 77 10 39 295 103656 103912 Prosthecochloris sp. CIB 2401 chromosome, complete genome blastn 65967 209 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Prosthecochloris Prosthecochloris sp. CIB 2401

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;