contig_metadata
16 rows where bioproject = "PRJNA745553", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5827672 | 5827672 | PRJNA745553_S_NODE_14085_length_328_cov_2.152941_g13890_i0 | PRJNA745553 | 14085 | 328 | 2.152941 | 7.06164648 | Bdellovibrio sp. HCB337 | 3394358 | Bacteria | Bacteria | 224 | 6.179999999999998e-54 | NTclustered | gi|2895525383|gb|CP178621.1| | 3394358 | g13890 | i0 | 79.937 | 258.164634146341 | 319 | 53 | 95 | 9 | 17 | 328 | 3448035 | 3448349 | Bdellovibrio sp. HCB337 chromosome, complete genome | blastn | 84678 | 224 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Bdellovibrio | Bdellovibrio sp. HCB337 | ||
| 5827896 | 5827896 | PRJNA745553_S_NODE_25945_length_244_cov_2.274854_g25750_i0 | PRJNA745553 | 25945 | 244 | 2.274854 | 5.55064376 | uncultured Oligoflexales bacterium | 2735263 | Bacteria | Bacteria | 148 | 2.7299999999999997e-31 | NTclustered | gi|2531963191|emb|OY282434.1| | 2735263 | g25750 | i0 | 83.537 | 105.204918032787 | 164 | 22 | 66 | 5 | 21 | 180 | 954538 | 954700 | MAG: uncultured Oligoflexales bacterium genome assembly, chromosome: 1 | blastn | 25670 | 148 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Oligoflexia | Oligoflexales | uncultured Oligoflexales bacterium | ||||
| 8377491 | 8377491 | PRJNA745553_S_NODE_18347_length_288_cov_4.609302_g18152_i0 | PRJNA745553 | 18347 | 288 | 4.609302 | 13.27478976 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 359 | 1.4e-94 | NTclustered | gi|2867657404|gb|CP174607.1| | 3383025 | g18152 | i0 | 95.928 | 59.1597222222222 | 221 | 9 | 77 | 0 | 21 | 241 | 1292539 | 1292759 | Peredibacter sp. HCB2-198 chromosome, complete genome | blastn | 17038 | 359 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 | ||
| 9652834 | 9652834 | PRJNA745553_S_NODE_4708_length_514_cov_3.038549_g4517_i0 | PRJNA745553 | 4708 | 514 | 3.038549 | 15.61814186 | Peredibacter sp. HCB2-198 | 3383025 | Bacteria | Bacteria | 675 | 0 | NTclustered | gi|2867657404|gb|CP174607.1| | 3383025 | g4517 | i0 | 91.147 | 122.570038910506 | 497 | 44 | 97 | 0 | 10 | 506 | 1292276 | 1292772 | Peredibacter sp. HCB2-198 chromosome, complete genome | blastn | 63001 | 675 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter sp. HCB2-198 | ||
| 10927967 | 10927967 | PRJNA745553_S_NODE_10049_length_382_cov_5.190939_g9854_i0 | PRJNA745553 | 10049 | 382 | 5.190939 | 19.82938698 | Bdellovibrionota bacterium | 3034175 | Bacteria | Bacteria | 322 | 2.51e-83 | NTclustered | gi|2556916994|gb|CP129486.1| | 3034175 | g9854 | i0 | 83.014 | 169.523560209424 | 365 | 52 | 94 | 9 | 5 | 362 | 469192 | 469553 | MAG: Bdellovibrionota bacterium isolate cMAG.10 chromosome, complete genome | blastn | 64758 | 322 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionota bacterium | ||||||
| 12678288 | 12678288 | PRJNA745553_S_NODE_23010_length_258_cov_1.562162_g22815_i0 | PRJNA745553 | 23010 | 258 | 1.562162 | 4.03037796 | Peredibacter | 263370 | Bacteria | Bacteria | 451 | 1.98e-122 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g22815 | i0 | 98.444 | 250.027131782946 | 257 | 3 | 99 | 1 | 2 | 258 | 512012 | 511757 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 64507 | 451 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 13478205 | 13478205 | PRJNA745553_S_NODE_4611_length_518_cov_11.907865_g4421_i0 | PRJNA745553 | 4611 | 518 | 11.907865 | 61.6827407 | Peredibacter starrii | 28202 | Bacteria | Bacteria | 717 | 0 | NTclustered | gi|2631252187|gb|CP139487.1| | 28202 | g4421 | i0 | 92.742 | 100.667953667954 | 496 | 36 | 96 | 0 | 2 | 497 | 511179 | 510684 | Peredibacter starrii strain A3.12 chromosome, complete genome | blastn | 52146 | 717 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bacteriovoracia | Bacteriovoracales | Bacteriovoracaceae | Peredibacter | Peredibacter starrii | ||
| 13478287 | 13478287 | PRJNA745553_S_NODE_8551_length_411_cov_5.352071_g8356_i0 | PRJNA745553 | 8551 | 411 | 5.352071 | 21.99701181 | Micavibrio aeruginosavorus | 349221 | Bacteria | Bacteria | 364 | 4.469999999999999e-96 | NTclustered | gi|1950812799|gb|CP066681.1| | 349221 | g8356 | i0 | 84.01 | 254.360097323601 | 394 | 48 | 94 | 15 | 15 | 400 | 659521 | 659907 | Micavibrio aeruginosavorus isolate NC_groundwater_70_Ag_B-0.1um_54_66 chromosome | blastn | 104542 | 364 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Micavibrio | Micavibrio aeruginosavorus | ||
| 24150265 | 24150265 | PRJNA745553_S_NODE_17839_length_292_cov_3.232877_g17644_i0 | PRJNA745553 | 17839 | 292 | 3.232877 | 9.44000084 | Pseudobdellovibrionaceae | 213483 | Bacteria | Bacteria | 335 | 2.4e-87 | NTclustered | gi|507148233|ref|NR_103040.1| | 453816 | g17644 | i0 | 87.415 | 219.880136986301 | 294 | 34 | 100 | 3 | 1 | 292 | 2394 | 2102 | Bdellovibrio exovorus strain JSS 23S ribosomal RNA gene, complete sequence | blastn | 64205 | 335 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrio | Pseudobdellovibrio exovorus | ||
| 26799517 | 26799517 | PRJNA745553_S_NODE_24681_length_249_cov_4.602273_g24486_i0 | PRJNA745553 | 24681 | 249 | 4.602273 | 11.45965977 | Bdellovibrionota bacterium | 3034175 | Bacteria | Bacteria | 104 | 2.81e-26 | NR | HEY8279091.1 | 3034175 | g24486 | i0 | 70.6 | 0.819277108433735 | 68 | 20 | 81.9 | 0 | 223 | 20 | 33 | 100 | HEY8279091.1 prepilin-type N-terminal cleavage/methylation domain-containing protein [Bdellovibrionota bacterium] | diamond | 204 | 104 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionota bacterium | ||||||
| 27526691 | 27526691 | PRJNA745553_S_NODE_18443_length_287_cov_5.037383_g18248_i0 | PRJNA745553 | 18443 | 287 | 5.037383 | 14.45728921 | Oligoflexus sp. | 1971216 | Bacteria | Bacteria | 89 | 1.61e-19 | NR | WP_324958659.1 | 1971216 | g18248 | i0 | 54.6 | 1.01393728222997 | 97 | 28 | 84.7 | 2 | 245 | 3 | 16 | 112 | WP_324958659.1 hypothetical protein [Oligoflexus sp.] | diamond | 291 | 89 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Oligoflexia | Oligoflexales | Oligoflexaceae | Oligoflexus | Oligoflexus sp. | ||
| 27590029 | 27590029 | PRJNA745553_S_NODE_17144_length_298_cov_3.333333_g16949_i0 | PRJNA745553 | 17144 | 298 | 3.333333 | 9.93333234 | Bdellovibrionales bacterium | 2053517 | Bacteria | Bacteria | 71.6 | 5.23e-12 | NR | MBX3023134.1 | 2053517 | g16949 | i0 | 41.5 | 0.825503355704698 | 82 | 45 | 81.5 | 2 | 286 | 44 | 206 | 285 | MBX3023134.1 hypothetical protein [Bdellovibrionales bacterium] | diamond | 246 | 71.6 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium | ||||
| 27653156 | 27653156 | PRJNA745553_S_NODE_28724_length_227_cov_6.597403_g28529_i0 | PRJNA745553 | 28724 | 227 | 6.597403 | 14.97610481 | Micavibrio sp. | 2024841 | Bacteria | Bacteria | 94 | 2.6199999999999998e-23 | NR | HEY8189317.1 | 2024841 | g28529 | i0 | 68.3 | 3.87224669603524 | 60 | 19 | 79.3 | 0 | 48 | 227 | 1 | 60 | HEY8189317.1 CsbD family protein [Micavibrio sp.] | diamond | 879 | 94 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Micavibrio | Micavibrio sp. | ||
| 32171039 | 32171039 | PRJNA745553_S_NODE_26518_length_242_cov_1.366864_g26323_i0 | PRJNA745553 | 26518 | 242 | 1.366864 | 3.30781088 | Pseudobdellovibrionaceae bacterium | 2026715 | Bacteria | Bacteria | 82.8 | 5.05e-18 | NR | NJM09770.1 | 2026715 | g26323 | i0 | 56.1 | 0.818181818181818 | 66 | 29 | 81.8 | 0 | 25 | 222 | 59 | 124 | NJM09770.1 riboflavin synthase [Pseudobdellovibrionaceae bacterium] | diamond | 198 | 82.8 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Pseudobdellovibrionaceae | Pseudobdellovibrionaceae bacterium | |||
| 32392301 | 32392301 | PRJNA745553_S_NODE_19919_length_277_cov_1.887255_g19724_i0 | PRJNA745553 | 19919 | 277 | 1.887255 | 5.22769635 | Oligoflexus sp. | 1971216 | Bacteria | Bacteria | 66.6 | 1.16e-11 | NR | WP_324954830.1 | 1971216 | g19724 | i0 | 58 | 1.50541516245487 | 69 | 28 | 74.7 | 1 | 253 | 47 | 51 | 118 | WP_324954830.1 preprotein translocase subunit SecG [Oligoflexus sp.] | diamond | 417 | 66.6 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Oligoflexia | Oligoflexales | Oligoflexaceae | Oligoflexus | Oligoflexus sp. | ||
| 32875327 | 32875327 | PRJNA745553_S_NODE_7000_length_447_cov_1.483957_g6806_i0 | PRJNA745553 | 7000 | 447 | 1.483957 | 6.63328779 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 172 | 2.18e-51 | NR | MBL7714230.1 | 2053517 | g6806 | i0 | 77.1 | 2.40268456375839 | 118 | 26 | 79.2 | 1 | 94 | 447 | 2 | 118 | MBL7714230.1 NAD(P)-binding domain-containing protein [Bdellovibrionales bacterium] | diamond | 1074 | 172 | 1 | Bacteria | Pseudomonadati | Bdellovibrionota | Bdellovibrionia | Bdellovibrionales | Bdellovibrionales bacterium |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;