RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA745553", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA745553 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7576606 7576606 PRJNA745553_S_NODE_24626_length_250_cov_0.870056_g24431_i0 PRJNA745553 24626 250 0.870056 2.17514 Platyhelminthes 6157 Platyhelminthes Platyhelminthes 156 1.68e-33   NTclustered gi|2847232436|gb|PQ570387.1| 608036 g24431 i0 91.304 44.22 115 8 46 2 1 114 1142 1029 Gyrodactylus proterorhini isolate FP441 large subunit ribosomal RNA gene, partial sequence blastn 11055 156 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Monogenea Gyrodactylidea Gyrodactylidae Gyrodactylus Gyrodactylus proterorhini
8851702 8851702 PRJNA745553_S_NODE_25767_length_245_cov_1.343023_g25572_i0 PRJNA745553 25767 245 1.343023 3.29040635 Metazoa 33208 Platyhelminthes Platyhelminthes 100 7.79e-17   NTclustered gi|28273293|gb|AY157181.1| 6216 g25572 i0 96.667 22.7877551020408 60 2 24 0 186 245 3104 3163 Hymenolepis diminuta 28S large subunit ribosomal RNA gene, partial sequence blastn 5583 100 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Hymenolepididae Hymenolepis Hymenolepis diminuta
31579842 31579842 PRJNA745553_S_NODE_25296_length_247_cov_1.327586_g25101_i0 PRJNA745553 25296 247 1.327586 3.27913742 Paragonimus 34503 Platyhelminthes Platyhelminthes 77.8 8.82e-15   NR KAA3671584.1 34504 g25101 i0 59.4 4.80971659919028 64 24 77.7 2 56 247 215 276 KAA3671584.1 cathepsin F [Paragonimus westermani] diamond 1188 77.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Troglotrematidae Paragonimus Paragonimus westermani

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;