RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA745553", tax_kingdom = "Metazoa" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA745553 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5827588 5827588 PRJNA745553_S_NODE_10045_length_382_cov_6.213592_g9850_i0 PRJNA745553 10045 382 6.213592 23.73592144 Anneissia japonica 1529436 Echinodermata other_Eukaryota 130 1.8199999999999999e-34   NR XP_033125693.1 1529436 g9850 i0 65.2 4.28010471204188 92 32 72.3 0 23 298 168 259 XP_033125693.1 40S ribosomal protein S4, X isoform-like [Anneissia japonica] diamond 1635 130 1 Eukaryota Opisthokonta Metazoa Echinodermata Crinoidea Comatulida Comatulidae Anneissia Anneissia japonica
21126798 21126798 PRJNA745553_S_NODE_22757_length_259_cov_3.854839_g22562_i0 PRJNA745553 22757 259 3.854839 9.98403301 Strongylocentrotus purpuratus 7668 Echinodermata other_Eukaryota 117 8.25e-22   NTclustered gi|1752407404|ref|XM_003727190.3| 7668 g22562 i0 89.247 31.6718146718147 93 10 36 0 9 101 1331 1423 PREDICTED: Strongylocentrotus purpuratus beta-tubulin (SP-beta1) (LOC373275), transcript variant X1, mRNA blastn 8203 117 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus
30189014 30189014 PRJNA745553_S_NODE_27172_length_238_cov_5.406061_g26977_i0 PRJNA745553 27172 238 5.406061 12.86642518 Metazoa 33208 Echinodermata other_Eukaryota 45.1 0.00518   NR XP_038046461.1 46514 g26977 i0 52.9 1.15966386554622 34 14 40.3 1 8 103 311 344 XP_038046461.1 UPF0696 protein C11orf68 homolog [Patiria miniata] diamond 276 45.4 0.993392070484582 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;