RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA745553", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA745553 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3750379 3750379 PRJNA745553_S_NODE_22143_length_263_cov_1.621053_g21948_i0 PRJNA745553 22143 263 1.621053 4.26336939 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 128 3.88e-25   NTclustered gi|1208076740|gb|KX430457.3| 37360 g21948 i0 92.222 33.0380228136882 90 7 34 0 7 96 5597 5686 Plasmodiophora brassicae isolate Gangneung 1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 8689 128 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
22876245 22876245 PRJNA745553_S_NODE_3618_length_558_cov_8.556701_g3433_i0 PRJNA745553 3618 558 8.556701 47.74639158 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 149 3.18e-42   NR SPQ93437.1 37360 g3433 i0 67 2.36021505376344 109 36 58.6 0 85 411 32 140 SPQ93437.1 unnamed protein product [Plasmodiophora brassicae] diamond 1317 149 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
23677216 23677216 PRJNA745553_S_NODE_21839_length_264_cov_58.356021_g21644_i0 PRJNA745553 21839 264 58.356021 154.05989544 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 442 1.2199999999999994e-119   NTclustered gi|23268559|gb|AF537103.1| 37360 g21644 i0 97.665 458.185606060606 257 6 97 0 1 257 259 3 Plasmodiophora brassicae 23S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product blastn 120961 442 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27558080 27558080 PRJNA745553_S_NODE_2704_length_605_cov_6.740602_g2525_i0 PRJNA745553 2704 605 6.740602 40.7806421 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 115 1.2299999999999998e-29   NR CEP02593.1 37360 g2525 i0 58.2 0.48595041322314 98 41 48.6 0 556 263 5 102 CEP02593.1 hypothetical protein PBRA_002561 [Plasmodiophora brassicae] diamond 294 115 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;