RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA745553", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA745553 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18575703 18575703 PRJNA745553_S_NODE_11135_length_366_cov_3.928328_g10940_i0 PRJNA745553 11135 366 3.928328 14.37768048 Methanobrevibacter olleyae 294671 Archaea Archaea 379 1.3999999999999995e-100   NTclustered gi|998157363|gb|CP014265.1| 294671 g10940 i0 90.068 12.8770491803279 292 29 80 0 10 301 272201 272492 Methanobrevibacter olleyae strain YLM1 chromosome, complete genome blastn 4713 379 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter olleyae
19851190 19851190 PRJNA745553_S_NODE_19596_length_279_cov_5.417476_g19401_i0 PRJNA745553 19596 279 5.417476 15.11475804 Methanobrevibacter smithii 2173 Archaea Archaea 281 3.01e-71   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g19401 i0 87.603 7.66666666666667 242 30 87 0 28 269 1003493 1003252 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 2139 281 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;