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contig_metadata

23 rows where bioproject = "PRJNA745553", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 23 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 23 ✖

bioproject 1

  • PRJNA745553 · 23 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
724283 724283 PRJNA745553_S_NODE_28201_length_231_cov_3.898734_g28006_i0 PRJNA745553 28201 231 3.898734 9.00607554 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 121 5.579999999999999e-23   NTclustered gi|2874253978|emb|OY970303.1| 412054 g28006 i0 77.103 12.3766233766234 214 45 91 3 15 225 1904534 1904746 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 2859 121 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
3275373 3275373 PRJNA745553_S_NODE_12523_length_347_cov_2.678832_g12328_i0 PRJNA745553 12523 347 2.678832 9.29554704 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 468 2.75e-127   NTclustered gi|2874254107|emb|OY970192.1| 412054 g12328 i0 91.765 162.587896253602 340 23 97 5 1 338 1594241 1593905 MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 blastn 56418 468 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7102974 7102974 PRJNA745553_S_NODE_26746_length_241_cov_1.833333_g26551_i0 PRJNA745553 26746 241 1.833333 4.41833253 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 267 7.12e-67   NTclustered gi|2874253978|emb|OY970303.1| 412054 g26551 i0 88.789 210.174273858921 223 18 91 7 22 241 1904760 1904542 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 50652 267 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
7576675 7576675 PRJNA745553_S_NODE_5686_length_482_cov_4.090465_g5492_i0 PRJNA745553 5686 482 4.090465 19.7160413 Gemmatimonas 173479 Bacteria Bacteria 505 3e-138   NTclustered gi|470475286|ref|NR_076270.1| 173480 g5492 i0 86.229 42.2385892116183 472 57 97 7 3 471 468 2 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 20359 505 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
9652476 9652476 PRJNA745553_S_NODE_11568_length_360_cov_1.878049_g11373_i0 PRJNA745553 11568 360 1.878049 6.7609764 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 544 4.6199999999999996e-150   NTclustered gi|2874253938|emb|OY970263.1| 412054 g11373 i0 93.889 387.266666666667 360 22 100 0 1 360 802045 801686 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 139416 544 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10928344 10928344 PRJNA745553_S_NODE_4209_length_532_cov_45.283224_g4019_i0 PRJNA745553 4209 532 45.283224 240.90675168 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 555 3.269999999999999e-153   NTclustered gi|2874253789|emb|OY969773.1| 412054 g4019 i0 86.471 85.7669172932331 510 63 95 6 26 532 420758 421264 MAG: uncultured Gemmatimonadales bacterium isolate MFD04580.bin.2.49 genome assembly, chromosome: 1 blastn 45628 555 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
10928404 10928404 PRJNA745553_S_NODE_6949_length_448_cov_4.904000_g6755_i0 PRJNA745553 6949 448 4.904 21.96992 Gemmatirosa kalamazoonensis 861299 Bacteria Bacteria 416 1.34e-111   NTclustered gi|575456455|gb|CP007128.1| 861299 g6755 i0 85.238 52.8794642857143 420 44 92 15 23 432 3042713 3042302 Gemmatirosa kalamazoonesis strain KBS708, complete genome blastn 23690 416 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonensis
12203591 12203591 PRJNA745553_S_NODE_17510_length_295_cov_2.054054_g17315_i0 PRJNA745553 17510 295 2.054054 6.0594593 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 457 4.97e-124   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g17315 i0 94.613 78.9966101694915 297 12 100 4 1 295 2075070 2074776 Gemmatimonas phototrophica strain AP64, complete genome blastn 23304 457 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
12203820 12203820 PRJNA745553_S_NODE_30690_length_197_cov_4.080645_g30495_i0 PRJNA745553 30690 197 4.080645 8.03887065 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 193 9.63e-45   NTclustered gi|2874253978|emb|OY970303.1| 412054 g30495 i0 86.667 21.8324873096447 180 17 89 7 2 177 1904538 1904714 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 4301 193 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13952664 13952664 PRJNA745553_S_NODE_26611_length_241_cov_7.708333_g26416_i0 PRJNA745553 26611 241 7.708333 18.57708253 Gemmatimonas 173479 Bacteria Bacteria 324 4.16e-84   NTclustered gi|470475286|ref|NR_076270.1| 173480 g26416 i0 96.429 38.7261410788382 196 7 81 0 22 217 196 1 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 9333 326 0.993865030674847 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
14752989 14752989 PRJNA745553_S_NODE_15592_length_312_cov_2.523013_g15397_i0 PRJNA745553 15592 312 2.523013 7.87180056 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 412 1.1599999999999999e-110   NTclustered gi|2874253938|emb|OY970263.1| 412054 g15397 i0 92.44 96.8108974358974 291 19 92 1 1 288 802609 802319 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 30205 412 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
14753228 14753228 PRJNA745553_S_NODE_30212_length_205_cov_5.325758_g30017_i0 PRJNA745553 30212 205 5.325758 10.9178039 Longimicrobium sp. 2029185 Bacteria Bacteria 67 6.38e-11   NR HEU0016457.1 2029185 g30017 i0 51.7 2.5609756097561 60 29 87.8 0 16 195 968 1027 HEU0016457.1 amino acid adenylation domain-containing protein [Longimicrobium sp.] diamond 525 67 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
15227263 15227263 PRJNA745553_S_NODE_8852_length_405_cov_3.963855_g8657_i0 PRJNA745553 8852 405 3.963855 16.05361275 Gemmatimonas 173479 Bacteria Bacteria 699 0   NTclustered gi|470475286|ref|NR_076270.1| 173480 g8657 i0 97.778 163.074074074074 405 9 100 0 1 405 1427 1023 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 66045 699 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca
16026822 16026822 PRJNA745553_S_NODE_22773_length_259_cov_3.043011_g22578_i0 PRJNA745553 22773 259 3.043011 7.88139849 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 339 1.62e-88   NTclustered gi|2874253938|emb|OY970263.1| 412054 g22578 i0 90.347 622.057915057915 259 24 100 1 1 259 803120 802863 MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 blastn 161113 339 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16501564 16501564 PRJNA745553_S_NODE_11633_length_359_cov_3.251748_g11438_i0 PRJNA745553 11633 359 3.251748 11.67377532 Gemmatimonas 173479 Bacteria Bacteria 459 1.7199999999999999e-124   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g11438 i0 89.722 33.2896935933148 360 35 100 2 1 359 2076039 2076397 Gemmatimonas phototrophica strain AP64, complete genome blastn 11951 459 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
19050429 19050429 PRJNA745553_S_NODE_24995_length_248_cov_2.297143_g24800_i0 PRJNA745553 24995 248 2.297143 5.69691464 Gemmatimonas 173479 Bacteria Bacteria 353 5.49e-93   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g24800 i0 92.4 638.54435483871 250 15 99 4 2 248 2076655 2076407 Gemmatimonas phototrophica strain AP64, complete genome blastn 158359 353 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
22401855 22401855 PRJNA745553_S_NODE_6098_length_470_cov_2.460957_g5904_i0 PRJNA745553 6098 470 2.460957 11.5664979 uncultured Gemmatimonadaceae bacterium 246130 Bacteria Bacteria 431 5.0199999999999983e-116   NTclustered gi|2874253995|emb|OY970320.1| 246130 g5904 i0 83.721 28.2702127659574 473 60 99 16 1 467 231722 231261 MAG: uncultured Gemmatimonadaceae bacterium isolate MFD00031.bin.c.2 genome assembly, chromosome: 1 blastn 13287 431 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   uncultured Gemmatimonadaceae bacterium
24950664 24950664 PRJNA745553_S_NODE_18380_length_288_cov_2.441860_g18185_i0 PRJNA745553 18380 288 2.44186 7.0325568 Pseudogemmatithrix spongiicola 3062599 Bacteria Bacteria 231 3.19e-56   NTclustered gi|2557479348|gb|CP130613.1| 3062599 g18185 i0 86.239 5.22569444444444 218 24 75 6 40 254 3194595 3194809 Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome blastn 1505 231 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Pseudogemmatithrix Pseudogemmatithrix spongiicola
26894776 26894776 PRJNA745553_S_NODE_5901_length_476_cov_1.352357_g5707_i0 PRJNA745553 5901 476 1.352357 6.43721932 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 207 4.34e-62   NR HEX2611036.1 2448054 g5707 i0 82.1 0.775210084033613 123 22 77.5 0 3 371 320 442 HEX2611036.1 IS4 family transposase [Gemmatimonadales bacterium] diamond 369 207 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
29326329 29326329 PRJNA745553_S_NODE_13709_length_332_cov_4.119691_g13514_i0 PRJNA745553 13709 332 4.119691 13.67737412 Gemmatimonas sp. 1962908 Bacteria Bacteria 91.3 9.78e-19   NR HYW30166.1 1962908 g13514 i0 59.2 0.885542168674699 98 34 83.1 1 14 289 1 98 HYW30166.1 group II intron reverse transcriptase/maturase [Gemmatimonas sp.] diamond 294 91.3 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas sp.
29863162 29863162 PRJNA745553_S_NODE_7331_length_438_cov_1.265753_g7137_i0 PRJNA745553 7331 438 1.265753 5.54399814 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 172 9.44e-49   NR HEU4748609.1 2026741 g7137 i0 67.5 0.842465753424658 123 40 84.2 0 69 437 1 123 HEU4748609.1 phage portal protein [Gemmatimonadaceae bacterium] diamond 369 172 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
31168315 31168315 PRJNA745553_S_NODE_19095_length_283_cov_1.466667_g18900_i0 PRJNA745553 19095 283 1.466667 4.15066761 Pseudomonadati 3379134 Bacteria Bacteria 123 3.829999999999999e-31   NR MBL8983312.1 2026742 g18900 i0 62.5 10.2614840989399 88 33 93.3 0 2 265 335 422 MBL8983312.1 amidohydrolase [Gemmatimonadota bacterium] diamond 2904 123 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
31885957 31885957 PRJNA745553_S_NODE_15537_length_313_cov_0.962500_g15342_i0 PRJNA745553 15537 313 0.9625 3.012625 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 72 5.44e-13   NR MDP1861746.1 2026741 g15342 i0 61.8 1.03514376996805 55 21 52.7 0 148 312 23 77 MDP1861746.1 GNAT family N-acetyltransferase [Gemmatimonadaceae bacterium] diamond 324 72 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;