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contig_metadata

10 rows where bioproject = "PRJNA745553", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA745553 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
724015 724015 PRJNA745553_S_NODE_12561_length_346_cov_6.582418_g12366_i0 PRJNA745553 12561 346 6.582418 22.77516628 uncultured Rhizamoeba 1260765 Tubulinea other_Eukaryota 224 6.56e-54   NTclustered gi|511487963|gb|JX898537.1| 1260765 g12366 i0 81.69 6.35838150289017 284 38 80 13 1 278 276 1 Uncultured Rhizamoeba clone HCA_D03-34 28S ribosomal RNA gene, partial sequence blastn 2200 224 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae   uncultured Rhizamoeba
2000165 2000165 PRJNA745553_S_NODE_17642_length_294_cov_1.393665_g17447_i0 PRJNA745553 17642 294 1.393665 4.0973751 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 488 1.7499999999999996e-133   NTclustered gi|300078496|gb|GU001158.1| 5778 g17447 i0 96.599 5.5578231292517 294 10 100 0 1 294 1616 1323 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1634 488 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
2473977 2473977 PRJNA745553_S_NODE_11522_length_360_cov_7.247387_g11327_i0 PRJNA745553 11522 360 7.247387 26.0905932 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 569 7.62e-158   NTclustered gi|300078496|gb|GU001158.1| 5778 g11327 i0 98.75 68.2555555555556 320 4 89 0 19 338 1223 904 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 24572 569 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3275644 3275644 PRJNA745553_S_NODE_29743_length_214_cov_4.134752_g29548_i0 PRJNA745553 29743 214 4.134752 8.84836928 Phryganella paradoxa 2217853 Tubulinea other_Eukaryota 257 3.72e-64   NTclustered gi|1397644527|gb|MF497378.1| 2217853 g29548 i0 90.769 0.911214953271028 195 15 90 3 1 193 834 641 Phryganella paradoxa isolate KD1032 18S ribosomal RNA gene, partial sequence blastn 195 257 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Phryganellidae Phryganella Phryganella paradoxa
7103153 7103153 PRJNA745553_S_NODE_9006_length_402_cov_2.896657_g8811_i0 PRJNA745553 9006 402 2.896657 11.64456114 Phryganella paradoxa 2217853 Tubulinea other_Eukaryota 569 8.6e-158   NTclustered gi|1397644527|gb|MF497378.1| 2217853 g8811 i0 93.766 68.5298507462687 385 15 94 4 27 402 1062 678 Phryganella paradoxa isolate KD1032 18S ribosomal RNA gene, partial sequence blastn 27549 569 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Phryganellidae Phryganella Phryganella paradoxa
9652623 9652623 PRJNA745553_S_NODE_20348_length_274_cov_2.800995_g20153_i0 PRJNA745553 20348 274 2.800995 7.6747263 Cryptodifflugia operculata 1078836 Tubulinea other_Eukaryota 185 2.3799999999999993e-42   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g20153 i0 79.554 54.4525547445255 269 48 96 7 2 265 2579 2313 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 14920 185 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
10928153 10928153 PRJNA745553_S_NODE_19829_length_277_cov_8.970588_g19634_i0 PRJNA745553 19829 277 8.970588 24.84852876 Phryganella paradoxa 2217853 Tubulinea other_Eukaryota 344 3.75e-90   NTclustered gi|1397644527|gb|MF497378.1| 2217853 g19634 i0 94.273 46.2563176895307 227 9 81 4 23 245 1702 1928 Phryganella paradoxa isolate KD1032 18S ribosomal RNA gene, partial sequence blastn 12813 344 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Phryganellidae Phryganella Phryganella paradoxa
13478064 13478064 PRJNA745553_S_NODE_25411_length_246_cov_4.843931_g25216_i0 PRJNA745553 25411 246 4.843931 11.91607026 Phryganella paradoxa 2217853 Tubulinea other_Eukaryota 307 4.2900000000000005e-79   NTclustered gi|1397644527|gb|MF497378.1| 2217853 g25216 i0 91.964 36.369918699187 224 10 88 4 23 238 1705 1928 Phryganella paradoxa isolate KD1032 18S ribosomal RNA gene, partial sequence blastn 8947 307 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Phryganellidae Phryganella Phryganella paradoxa
18575732 18575732 PRJNA745553_S_NODE_1295_length_726_cov_11.637060_g1169_i0 PRJNA745553 1295 726 11.63706 84.4850556 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 1303 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g1169 i0 99.036 54.896694214876 726 7 100 0 1 726 5792 5067 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 39855 1303 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22401488 22401488 PRJNA745553_S_NODE_12618_length_346_cov_1.904762_g12423_i0 PRJNA745553 12618 346 1.904762 6.59047652 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 169 3.12e-37   NTclustered gi|300078497|gb|GU001159.1| 200886 g12423 i0 78.927 3.07803468208092 261 46 74 6 48 302 2095 1838 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 1065 169 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;