RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA744060" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA744060 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24949966 24949966 PRJNA744060_P_NODE_41740_length_258_cov_1.924324_g41411_i0 PRJNA744060 41740 258 1.924324 4.96475592 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 165 2.89e-36   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g41411 i0 78.776 1.89147286821705 245 52 95 0 1 245 2707957 2707713 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 488 165 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
26957572 26957572 PRJNA744060_P_NODE_17442_length_385_cov_4.756410_g17113_i0 PRJNA744060 17442 385 4.75641 18.3121785 Rhodothermales bacterium 2306054 Bacteria Bacteria 151 3.05e-44   NR MEX0600558.1 2306054 g17113 i0 56.2 2.83636363636364 121 52 93.5 1 362 3 6 126 MEX0600558.1 NAD(P)-binding protein [Rhodothermales bacterium] diamond 1092 151 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
27147102 27147102 PRJNA744060_P_NODE_52622_length_236_cov_2.208589_g52293_i0 PRJNA744060 52622 236 2.208589 5.21227004 Rhodothermales bacterium 2306054 Bacteria Bacteria 54.3 2.09e-6   NR HET6568231.1 2306054 g52293 i0 40.6 0.877118644067797 69 40 87.7 1 5 211 46 113 HET6568231.1 hypothetical protein [Rhodothermales bacterium] diamond 207 54.3 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium
27810994 27810994 PRJNA744060_P_NODE_17884_length_381_cov_1.886364_g17555_i0 PRJNA744060 17884 381 1.886364 7.18704684 Rhodothermaceae bacterium 2026787 Bacteria Bacteria 124 3.76e-30   NR NNF58571.1 2026787 g17555 i0 53.2 5.92125984251969 126 57 99.2 1 2 379 432 555 NNF58571.1 M28 family peptidase [Rhodothermaceae bacterium] diamond 2256 124 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium
28347592 28347592 PRJNA744060_P_NODE_6266_length_633_cov_2.675000_g5946_i0 PRJNA744060 6266 633 2.675 16.93275 Rhodothermus bifroesti 2823335 Bacteria Bacteria 179 3.39e-52   NR WP_210376410.1 2823335 g5946 i0 46.9 0.919431279620853 194 97 89.1 3 67 630 42 235 WP_210376410.1 GH12 family glycosyl hydrolase domain-containing protein [Rhodothermus bifroesti] diamond 582 179 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus bifroesti
29241680 29241680 PRJNA744060_P_NODE_35889_length_276_cov_1.522167_g35560_i0 PRJNA744060 35889 276 1.522167 4.20118092 root 1 Root_unresolved Root_unresolved 55.1 2.62e-6   NR WP_245846175.1 1850348 g35560 i0 49.2 1.95652173913043 59 29 63 1 189 16 116 174 WP_245846175.1 glycoside hydrolase family 3 N-terminal domain-containing protein [Longibacter salinarum] diamond 540 55.5 0.992792792792793 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Salisaetaceae Longibacter Longibacter salinarum
32592070 32592070 PRJNA744060_P_NODE_23499_length_335_cov_1.118321_g23170_i0 PRJNA744060 23499 335 1.118321 3.74637535 Bacteria 2 Bacteria Bacteria 76.6 1.37e-13   NR MDZ4699481.1 2306054 g23170 i0 36.9 3.04477611940298 111 41 99.4 2 3 335 523 604 MDZ4699481.1 glucosamine-6-phosphate deaminase [Rhodothermales bacterium] diamond 1020 76.6 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales     Rhodothermales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;