RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA744060" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA744060 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6302547 6302547 PRJNA744060_P_NODE_4125_length_772_cov_4.417740_g3838_i0 PRJNA744060 4125 772 4.41774 34.1049528 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 329 2.84e-108   NR MDF2378969.1 2044595 g3838 i0 61.5 2.99611398963731 257 96 99.9 1 2 772 159 412 MDF2378969.1 adenylosuccinate synthase [Candidatus Altimarinota bacterium] diamond 2313 329 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
30969167 30969167 PRJNA744060_P_NODE_50394_length_243_cov_1.376471_g50065_i0 PRJNA744060 50394 243 1.376471 3.34482453 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 45.1 0.00286   NR MBP7058763.1 2044595 g50065 i0 31.2 0.950617283950617 77 49 91.4 2 239 18 67 142 MBP7058763.1 DUF4116 domain-containing protein [Candidatus Altimarinota bacterium] diamond 231 45.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
32896692 32896692 PRJNA744060_P_NODE_26080_length_318_cov_4.595918_g25751_i0 PRJNA744060 26080 318 4.595918 14.61501924 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 65.1 3.41e-11   NR MCK5460378.1 2044595 g25751 i0 55.2 0.632075471698113 67 30 63.2 0 85 285 24 90 MCK5460378.1 HU family DNA-binding protein [Candidatus Altimarinota bacterium] diamond 201 65.1 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;