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contig_metadata

22 rows where bioproject = "PRJNA744060", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 22 ✖

tax_kingdom 1

  • Pseudomonadati · 22 ✖

bioproject 1

  • PRJNA744060 · 22 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3274392 3274392 PRJNA744060_P_NODE_19123_length_369_cov_2.206081_g18794_i0 PRJNA744060 19123 369 2.206081 8.14043889 Bdellovibrio sp. 28201 Bacteria Bacteria 130 1.57e-25   NTclustered gi|289320|gb|M61238.1|BDLDDAI 28201 g18794 i0 82.468 19.420054200542 154 21 41 6 216 366 603 753 Bdellovibrio sp. 16S rRNA gene, partial cds blastn 7166 130 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
4551485 4551485 PRJNA744060_P_NODE_14644_length_420_cov_1.904899_g14315_i0 PRJNA744060 14644 420 1.904899 8.0005758 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 223 1.98e-70   NR MBX2996387.1 2026715 g14315 i0 84.2 1.98571428571429 139 22 99.3 0 418 2 36 174 MBX2996387.1 flagellin FliC [Pseudobdellovibrionaceae bacterium] diamond 834 223 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
10927394 10927394 PRJNA744060_P_NODE_3869_length_794_cov_7.024965_g3585_i0 PRJNA744060 3869 794 7.024965 55.7782221 Oligoflexia bacterium 2599941 Bacteria Bacteria 189 3.14e-53   NR MBC7385198.1 2599941 g3585 i0 55.4 2.65617128463476 177 77 66.9 1 780 250 238 412 MBC7385198.1 M20/M25/M40 family metallo-hydrolase [Oligoflexia bacterium] diamond 2109 189 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
12678106 12678106 PRJNA744060_P_NODE_29490_length_301_cov_1.368421_g29161_i0 PRJNA744060 29490 301 1.368421 4.11894721 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 74.7 1.35e-13   NR MBS1969970.1 2053517 g29161 i0 49.4 5.12292358803987 85 24 84.7 3 256 2 6 71 MBS1969970.1 methyltransferase domain-containing protein [Bdellovibrionales bacterium] diamond 1542 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
13476780 13476780 PRJNA744060_P_NODE_14651_length_420_cov_1.527378_g14322_i0 PRJNA744060 14651 420 1.527378 6.4149876 Pseudomonadati 3379134 Bacteria Bacteria 189 3.78e-56   NR WP_088566726.1 959 g14322 i0 70.9 5.45 127 37 90.7 0 412 32 256 382 WP_088566726.1 cystathionine gamma-synthase [Bdellovibrio bacteriovorus] diamond 2289 189 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
13476960 13476960 PRJNA744060_P_NODE_24551_length_328_cov_1.376471_g24222_i0 PRJNA744060 24551 328 1.376471 4.51482488 Bdellovibrio sp. HCB209 3394354 Bacteria Bacteria 117 1.08e-21   NTclustered gi|2895998570|gb|CP178618.1| 3394354 g24222 i0 79.191 5.41158536585366 173 32 52 4 8 178 2692020 2691850 Bdellovibrio sp. HCB209 chromosome, complete genome blastn 1775 117 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB209
24949857 24949857 PRJNA744060_P_NODE_34700_length_280_cov_1.507246_g34371_i0 PRJNA744060 34700 280 1.507246 4.2202888 Bdellovibrio bacteriovorus 959 Bacteria Bacteria 416 7.939999999999998e-112   NTclustered gi|2800920897|gb|CP168968.1| 959 g34371 i0 93.548 43.9071428571429 279 18 99 0 1 279 929791 930069 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 12294 416 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
26894744 26894744 PRJNA744060_P_NODE_51861_length_240_cov_2.239521_g51532_i0 PRJNA744060 51861 240 2.239521 5.3748504 Oligoflexales bacterium 2687297 Bacteria Bacteria 70.9 4.36e-12   NR MFK7873564.1 2687297 g51532 i0 43.4 1.0375 83 40 95 1 230 3 513 595 MFK7873564.1 hypothetical protein [Oligoflexales bacterium] diamond 249 70.9 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales     Oligoflexales bacterium
27305740 27305740 PRJNA744060_P_NODE_8683_length_542_cov_2.140725_g8358_i0 PRJNA744060 8683 542 2.140725 11.6027295 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 99.4 4.64e-21   NR MBN22211.1 2026715 g8358 i0 41.6 0.891143911439114 161 85 86.9 6 72 542 15 170 MBN22211.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 483 99.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28126673 28126673 PRJNA744060_P_NODE_49745_length_244_cov_0.912281_g49416_i0 PRJNA744060 49745 244 0.912281 2.22596564 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 112 4.18e-29   NR MEZ0391714.1 2026715 g49416 i0 70.5 0.959016393442623 78 22 94.7 1 232 2 34 111 MEZ0391714.1 hypothetical protein [Pseudobdellovibrionaceae bacterium] diamond 234 112 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
28442461 28442461 PRJNA744060_P_NODE_39946_length_263_cov_1.642105_g39617_i0 PRJNA744060 39946 263 1.642105 4.31873615 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 129 1.05e-33   NR MCB0363622.1 2053517 g39617 i0 65.5 1.90494296577947 84 29 95.8 0 259 8 33 116 MCB0363622.1 S9 family peptidase [Bdellovibrionales bacterium] diamond 501 129 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
28979210 28979210 PRJNA744060_P_NODE_37308_length_271_cov_2.196970_g36979_i0 PRJNA744060 37308 271 2.19697 5.9537887 Oligoflexia bacterium 2599941 Bacteria Bacteria 74.3 3.33e-13   NR MDR3608077.1 2599941 g36979 i0 89.5 0.885608856088561 38 4 42.1 0 270 157 277 314 MDR3608077.1 cystathionine gamma-synthase [Oligoflexia bacterium] diamond 240 74.3 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia       Oligoflexia bacterium
29011015 29011015 PRJNA744060_P_NODE_29588_length_300_cov_2.898678_g29259_i0 PRJNA744060 29588 300 2.898678 8.696034 Pseudobacteriovorax sp. 2020859 Bacteria Bacteria 51.6 3.49e-5   NR NRA64141.1 2020859 g29259 i0 42.9 0.56 56 31 55 1 3 167 72 127 NRA64141.1 trypsin-like peptidase domain-containing protein [Pseudobacteriovorax sp.] diamond 168 51.6 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Pseudobacteriovoracaceae Pseudobacteriovorax Pseudobacteriovorax sp.
29263036 29263036 PRJNA744060_P_NODE_45009_length_251_cov_1.589888_g44680_i0 PRJNA744060 45009 251 1.589888 3.99061888 Bacteriovorax stolpii 960 Bacteria Bacteria 75.1 7.1e-14   NR WP_102243639.1 960 g44680 i0 46.2 5.28286852589641 78 41 93.2 1 13 246 52 128 WP_102243639.1 trypsin-like serine peptidase [Bacteriovorax stolpii] diamond 1326 75.1 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax stolpii
29620090 29620090 PRJNA744060_P_NODE_46170_length_249_cov_2.250000_g45841_i0 PRJNA744060 46170 249 2.25 5.6025 root 1 Root_unresolved Root_unresolved 66.6 1.57e-10   NR WP_015468752.1 453816 g45841 i0 43.7 3.07228915662651 87 41 96.4 3 249 10 309 394 WP_015468752.1 thrombospondin type-1 domain-containing protein [Pseudobdellovibrio exovorus] diamond 765 67 0.994029850746269 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio exovorus
29957894 29957894 PRJNA744060_P_NODE_47751_length_247_cov_0.896552_g47422_i0 PRJNA744060 47751 247 0.896552 2.21448344 Bdellovibrio sp. 28201 Bacteria Bacteria 43.9 0.0134   NR WP_415062841.1 28201 g47422 i0 47.8 0.995951417004049 46 24 55.9 0 23 160 5 50 WP_415062841.1 hypothetical protein [Bdellovibrio sp.] diamond 246 43.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
30347603 30347603 PRJNA744060_P_NODE_46432_length_249_cov_0.886364_g46103_i0 PRJNA744060 46432 249 0.886364 2.20704636 Bdellovibrio 958 Bacteria Bacteria 143 1.06e-39   NR WP_374073910.1 958 g46103 i0 80.7 4 83 16 100 0 249 1 158 240 WP_374073910.1 MULTISPECIES: asparaginase [Bdellovibrio] diamond 996 143 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio  
30463840 30463840 PRJNA744060_P_NODE_20993_length_353_cov_1.735714_g20664_i0 PRJNA744060 20993 353 1.735714 6.12707042 Silvanigrellaceae bacterium 2654442 Bacteria Bacteria 45.4 0.00112   NR MBX9703359.1 2654442 g20664 i0 40.4 0.39943342776204 47 28 39.9 0 78 218 1 47 MBX9703359.1 hypothetical protein [Silvanigrellaceae bacterium] diamond 141 45.4 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae   Silvanigrellaceae bacterium
31221504 31221504 PRJNA744060_P_NODE_2935_length_901_cov_2.991546_g2679_i0 PRJNA744060 2935 901 2.991546 26.95382946 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 242 1.28e-76   NR MBX9767865.1 2053517 g2679 i0 55.7 0.669256381798002 201 89 66.9 0 822 220 1 201 MBX9767865.1 hypothetical protein [Bdellovibrionales bacterium] diamond 603 242 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32180881 32180881 PRJNA744060_P_NODE_18238_length_378_cov_1.416393_g17909_i0 PRJNA744060 18238 378 1.416393 5.35396554 Bdellovibrio 958 Bacteria Bacteria 103 1e-23   NR WP_374074152.1 959 g17909 i0 38.6 2.01587301587302 127 76 99.2 1 375 1 60 186 WP_374074152.1 trypsin-like serine peptidase [Bdellovibrio bacteriovorus] diamond 762 104 0.990384615384615 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
32202392 32202392 PRJNA744060_P_NODE_10098_length_504_cov_2.199536_g9771_i0 PRJNA744060 10098 504 2.199536 11.08566144 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 47.4 0.00584   NR MBC6416186.1 2053517 g9771 i0 60 0.452380952380952 35 14 20.8 0 500 396 84 118 MBC6416186.1 sel1 repeat family protein [Bdellovibrionales bacterium] diamond 228 47.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
32202457 32202457 PRJNA744060_P_NODE_47198_length_248_cov_0.891429_g46869_i0 PRJNA744060 47198 248 0.891429 2.21074392 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 127 1.48e-33   NR MEZ0391836.1 2026715 g46869 i0 73.2 0.991935483870968 82 22 99.2 0 247 2 184 265 MEZ0391836.1 signal peptide peptidase SppA [Pseudobdellovibrionaceae bacterium] diamond 246 127 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;