RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA744060" and tax_kingdom = "Fusobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 6 ✖

bioproject 1

  • PRJNA744060 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4551768 4551768 PRJNA744060_P_NODE_28564_length_305_cov_3.193966_g28235_i0 PRJNA744060 28564 305 3.193966 9.7415963 Fusobacterium polymorphum 76857 Bacteria Bacteria 54.7 0.008   NTclustered gi|2706071841|gb|CP077111.1| 76857 g28235 i0 100 0.534426229508197 29 0 10 0 113 141 1603364 1603336 Fusobacterium polymorphum strain KCOM1275 chromosome, complete genome blastn 163 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
7576442 7576442 PRJNA744060_P_NODE_49746_length_244_cov_0.912281_g49417_i0 PRJNA744060 49746 244 0.912281 2.22596564 Leptotrichia 32067 Bacteria Bacteria 446 8.639999999999999e-121   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g49417 i0 99.59 136.954918032787 244 1 100 0 1 244 499377 499134 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 33417 446 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
28767976 28767976 PRJNA744060_P_NODE_39967_length_263_cov_1.636842_g39638_i0 PRJNA744060 39967 263 1.636842 4.30489446 Psychrilyobacter 623282 Bacteria Bacteria 53.1 1.07e-5   NR WP_114643075.1 623282 g39638 i0 47.3 1.16349809885932 55 29 62.7 0 174 10 918 972 WP_114643075.1 MULTISPECIES: vWA domain-containing protein [Psychrilyobacter] diamond 306 53.1 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Psychrilyobacter  
29989552 29989552 PRJNA744060_P_NODE_31531_length_292_cov_2.100457_g31202_i0 PRJNA744060 31531 292 2.100457 6.13333444 uncultured Fusobacterium sp. 159267 Bacteria Bacteria 57 1.21e-7   NR WP_293961082.1 159267 g31202 i0 39.7 0.801369863013699 78 39 71.9 1 1 210 47 124 WP_293961082.1 DUF4116 domain-containing protein [uncultured Fusobacterium sp.] diamond 234 57 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium uncultured Fusobacterium sp.
30305963 30305963 PRJNA744060_P_NODE_42412_length_256_cov_2.633880_g42083_i0 PRJNA744060 42412 256 2.63388 6.7427328 uncultured Fusobacterium sp. 159267 Bacteria Bacteria 49.7 1.58e-4   NR WP_293960554.1 159267 g42083 i0 50 0.4453125 38 19 44.5 0 1 114 353 390 WP_293960554.1 tetratricopeptide repeat protein [uncultured Fusobacterium sp.] diamond 114 49.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium uncultured Fusobacterium sp.
32906734 32906734 PRJNA744060_P_NODE_39820_length_263_cov_2.794737_g39491_i0 PRJNA744060 39820 263 2.794737 7.35015831 Bacteria candidate phyla 1783234 Bacteria Bacteria 65.9 4.95e-11   NR WP_300331172.1 68766 g39491 i0 43.5 12.9011406844106 85 44 97 2 256 2 31 111 WP_300331172.1 peptide deformylase [Fusobacterium sp.] diamond 3393 66.2 0.995468277945619 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;