RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA744060", tax_kingdom = "Fungi" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

  • Fungi · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA744060 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14752278 14752278 PRJNA744060_P_NODE_36252_length_275_cov_1.158416_g35923_i0 PRJNA744060 36252 275 1.158416 3.185644 Eukaryota 2759 Fungi Fungi 163 4.2e-45   NR BAL15353.1 70189 g35923 i0 82.4 8.93454545454545 91 16 99.3 0 2 274 402 492 BAL15353.1 translation elongation factor 2, partial [Olpidium brassicae] diamond 2457 163 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
28231034 28231034 PRJNA744060_P_NODE_36206_length_275_cov_1.440594_g35877_i0 PRJNA744060 36206 275 1.440594 3.9616335 root 1 Root_unresolved Root_unresolved 143 1e-39   NR KAG5459033.1 278681 g35877 i0 80.2 7.94181818181818 91 18 99.3 0 275 3 206 296 KAG5459033.1 MAG: Dihydrolipoyl dehydrogenase mitochondrial precursor [Olpidium bornovanus] diamond 2184 143 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium bornovanus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;