RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA744060" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA744060 · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16025887 16025887 PRJNA744060_P_NODE_30993_length_294_cov_3.253394_g30664_i0 PRJNA744060 30993 294 3.253394 9.56497836 uncultured delta proteobacterium HF0070_10I02 710824 Bacteria Bacteria 217 9.14e-52   NTclustered gi|297181000|gb|GU474857.1| 710824 g30664 i0 80.272 65.4319727891156 294 53 99 4 5 294 6183 6475 Uncultured delta proteobacterium HF0070_10I02 genomic sequence blastn 19237 217 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0070_10I02
28568545 28568545 PRJNA744060_P_NODE_45467_length_250_cov_2.576271_g45138_i0 PRJNA744060 45467 250 2.576271 6.4406775 Olavius algarvensis associated proteobacterium Delta 3 426688 Bacteria Bacteria 53.5 5.73e-6   NR CAB5082301.1 426688 g45138 i0 39.1 1.68 69 38 79.2 2 240 43 230 297 CAB5082301.1 ADP-ribosylglycohydrolase family protein [Olavius algarvensis associated proteobacterium Delta 3] diamond 420 53.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis associated proteobacterium Delta 3
30379045 30379045 PRJNA744060_P_NODE_9012_length_532_cov_11.771242_g8686_i0 PRJNA744060 9012 532 11.771242 62.62300744 Myxococcota 2818505 Bacteria Bacteria 99.4 4.480000000000001e-21   NR WP_111332872.1 1548548 g8686 i0 41.1 3.94172932330827 141 72 78.9 3 5 424 22 152 WP_111332872.1 NAD-dependent epimerase/dehydratase family protein [Bradymonas sediminis] diamond 2097 99.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Bradymonas Bradymonas sediminis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;