RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA744060", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA744060 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28221147 28221147 PRJNA744060_P_NODE_52486_length_236_cov_4.766871_g52157_i0 PRJNA744060 52486 236 4.766871 11.24981556 Lentisphaerota bacterium 1932692 Bacteria Bacteria 70.5 4.31e-12   NR MEI6056546.1 1932692 g52157 i0 43.6 0.991525423728814 78 37 90.3 1 229 17 170 247 MEI6056546.1 adenosine kinase [Lentisphaerota bacterium] diamond 234 70.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium
32297722 32297722 PRJNA744060_P_NODE_54139_length_228_cov_2.219355_g53810_i0 PRJNA744060 54139 228 2.219355 5.0601294 Lentisphaerota bacterium 1932692 Bacteria Bacteria 42.4 0.0443   NR NLG13462.1 1932692 g53810 i0 35.1 0.75 57 36 73.7 1 16 183 935 991 NLG13462.1 alpha/beta fold hydrolase [Lentisphaerota bacterium] diamond 171 42.4 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;