RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA744060", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 12 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 12 ✖

bioproject 1

  • PRJNA744060 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3274950 3274950 PRJNA744060_P_NODE_51283_length_242_cov_0.923077_g50954_i0 PRJNA744060 51283 242 0.923077 2.23384634 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 440 3.9799999999999986e-119   NTclustered gi|971146634|emb|LN879502.1| 389348 g50954 i0 99.587 1 242 0 100 1 1 242 2392000 2391760 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 242 440 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
5826669 5826669 PRJNA744060_P_NODE_21525_length_349_cov_1.130435_g21196_i0 PRJNA744060 21525 349 1.130435 3.94521815 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 645 1.1899999999999993e-180   NTclustered gi|971146634|emb|LN879502.1| 389348 g21196 i0 100 1 349 0 100 0 1 349 639430 639778 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 349 645 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
7101790 7101790 PRJNA744060_P_NODE_21126_length_352_cov_1.670251_g20797_i0 PRJNA744060 21126 352 1.670251 5.87928352 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 651 0   NTclustered gi|971146634|emb|LN879502.1| 389348 g20797 i0 100 1 352 0 100 0 1 352 1147869 1147518 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 352 651 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
7101875 7101875 PRJNA744060_P_NODE_25166_length_324_cov_1.243028_g24837_i0 PRJNA744060 25166 324 1.243028 4.02741072 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 599 8.67e-167   NTclustered gi|971146634|emb|LN879502.1| 389348 g24837 i0 100 16.4043209876543 324 0 100 0 1 324 2024393 2024716 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 5315 599 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
13477273 13477273 PRJNA744060_P_NODE_41451_length_259_cov_1.559140_g41122_i0 PRJNA744060 41451 259 1.55914 4.0381726 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 479 9.13e-131   NTclustered gi|971146634|emb|LN879502.1| 389348 g41122 i0 100 1.93436293436293 259 0 100 0 1 259 386592 386850 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 501 479 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
19850526 19850526 PRJNA744060_P_NODE_44016_length_253_cov_0.866667_g43687_i0 PRJNA744060 44016 253 0.866667 2.19266751 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 468 1.92e-127   NTclustered gi|971146634|emb|LN879502.1| 389348 g43687 i0 100 1 253 0 100 0 1 253 1863055 1863307 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 253 468 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
23676574 23676574 PRJNA744060_P_NODE_47539_length_247_cov_1.729885_g47210_i0 PRJNA744060 47539 247 1.729885 4.27281595 Candidatus Protochlamydia naegleriophila 389348 Bacteria Bacteria 457 4.05e-124   NTclustered gi|971146634|emb|LN879502.1| 389348 g47210 i0 100 1 247 0 100 0 1 247 1655820 1655574 Protochlamydia naegleriophila genome assembly PNK1, chromosome : cPNK blastn 247 457 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
29263050 29263050 PRJNA744060_P_NODE_7629_length_576_cov_3.121272_g7305_i0 PRJNA744060 7629 576 3.121272 17.97852672 Chlamydiales bacterium 2047757 Bacteria Bacteria 198 7.52e-58   NR MFT4553856.1 2047757 g7305 i0 57.9 6.61458333333333 159 67 82.8 0 2 478 279 437 MFT4553856.1 alanine-glyoxylate transaminase/(R)-3-amino-2-methylpropionate-pyruvate transaminase [Chlamydiales bacterium] diamond 3810 198 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29957843 29957843 PRJNA744060_P_NODE_18791_length_372_cov_4.665552_g18462_i0 PRJNA744060 18791 372 4.665552 17.35585344 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 68.6 1.21e-10   NR MFI0434572.1 2052176 g18462 i0 52.2 0.556451612903226 69 26 55.6 1 371 165 316 377 MFI0434572.1 SET domain-containing protein-lysine N-methyltransferase [Parachlamydiaceae bacterium] diamond 207 68.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30305958 30305958 PRJNA744060_P_NODE_37792_length_270_cov_0.974619_g37463_i0 PRJNA744060 37792 270 0.974619 2.6314713 Chlamydiota bacterium 2081524 Bacteria Bacteria 43.5 0.0279   NR MCI0381953.1 2081524 g37463 i0 45.7 1.04444444444444 46 25 51.1 0 140 3 596 641 MCI0381953.1 tetratricopeptide repeat protein [Chlamydiota bacterium] diamond 282 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
31158205 31158205 PRJNA744060_P_NODE_52335_length_237_cov_3.182927_g52006_i0 PRJNA744060 52335 237 3.182927 7.54353699 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 50.4 6.26e-5   NR MFI0434572.1 2052176 g52006 i0 35.6 0.924050632911392 73 34 75.9 1 57 236 19 91 MFI0434572.1 SET domain-containing protein-lysine N-methyltransferase [Parachlamydiaceae bacterium] diamond 219 50.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
31474922 31474922 PRJNA744060_P_NODE_45996_length_250_cov_0.881356_g45667_i0 PRJNA744060 45996 250 0.881356 2.20339 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 126 6.16e-33   NR HSX12653.1 2047756 g45667 i0 77.8 1.968 81 18 97.2 0 250 8 99 179 HSX12653.1 ribose-phosphate pyrophosphokinase [Rhabdochlamydiaceae bacterium] diamond 492 126 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;