RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA744060", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 4 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA744060 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27021090 27021090 PRJNA744060_P_NODE_38182_length_268_cov_2.876923_g37853_i0 PRJNA744060 38182 268 2.876923 7.71015364 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 67 1.44e-10   NR NQT32952.1 2035772 g37853 i0 48.3 0.671641791044776 60 30 66 1 85 261 236 295 NQT32952.1 FecR domain-containing protein [Candidatus Omnitrophota bacterium] diamond 180 67 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
27369112 27369112 PRJNA744060_P_NODE_35383_length_278_cov_0.790244_g35054_i0 PRJNA744060 35383 278 0.790244 2.19687832 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 89.4 2.43e-18   NR MDO8579890.1 2035772 g35054 i0 48.4 1.02517985611511 95 38 98.2 3 4 276 340 427 MDO8579890.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 285 89.4 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
29452385 29452385 PRJNA744060_P_NODE_52970_length_234_cov_2.285714_g52641_i0 PRJNA744060 52970 234 2.285714 5.34857076 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 44.7 0.00523   NR MDD5195895.1 2035772 g52641 i0 34.9 0.551282051282051 43 28 55.1 0 54 182 89 131 MDD5195895.1 hypothetical protein [Candidatus Omnitrophota bacterium] diamond 129 44.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30062553 30062553 PRJNA744060_P_NODE_15931_length_403_cov_2.593939_g15602_i0 PRJNA744060 15931 403 2.593939 10.45357417 root 1 Root_unresolved Root_unresolved 65.5 3.51e-10   NR MCM8824092.1 2035772 g15602 i0 39.8 4.21339950372208 93 55 69.2 1 297 19 14 105 MCM8824092.1 30S ribosomal protein S5 [Candidatus Omnitrophota bacterium] diamond 1698 65.5 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;