RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA744060", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA744060 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14752258 14752258 PRJNA744060_P_NODE_34852_length_279_cov_2.786408_g34523_i0 PRJNA744060 34852 279 2.786408 7.77407832 Pseudomonadati 3379134 Bacteria Bacteria 137 2.7e-35   NR MEI6757160.1 1095 g34523 i0 72.8 13.8494623655914 92 25 98.9 0 277 2 274 365 MEI6757160.1 NADP-dependent isocitrate dehydrogenase [Chlorobium sp.] diamond 3864 137 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
28537283 28537283 PRJNA744060_P_NODE_44507_length_252_cov_0.871508_g44178_i0 PRJNA744060 44507 252 0.871508 2.19620016 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 71.6 2.7e-12   NR MEI8033813.1 2067991 g44178 i0 58.9 0.666666666666667 56 23 66.7 0 2 169 424 479 MEI8033813.1 hypothetical protein [Chlorobiaceae bacterium] diamond 168 71.6 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;