RNAquarium Metadata Server
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contig_metadata

12 rows where bioproject = "PRJNA744060", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 12 ✖

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA744060 · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2473891 2473891 PRJNA744060_P_NODE_39102_length_265_cov_9.307292_g38773_i0 PRJNA744060 39102 265 9.307292 24.6643238 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 479 9.38e-131   NTclustered gi|909719645|gb|KT185625.1| 5778 g38773 i0 99.245 38.1509433962264 265 2 100 0 1 265 3603 3867 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 10110 479 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
9651795 9651795 PRJNA744060_P_NODE_33688_length_284_cov_1.236967_g33359_i0 PRJNA744060 33688 284 1.236967 3.51298628 Ptolemeba noxubium 1525730 Tubulinea other_Eukaryota 503 6.02e-138   NTclustered gi|667752761|gb|KJ542110.1| 1525730 g33359 i0 98.592 89.3098591549296 284 4 100 0 1 284 1417 1134 Ptolemeba noxubium isolate Nx13-1c 18S ribosomal RNA gene, partial sequence blastn 25364 503 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba noxubium
10127170 10127170 PRJNA744060_P_NODE_28528_length_305_cov_4.827586_g28199_i0 PRJNA744060 28528 305 4.827586 14.7241373 Tubulinea 555369 Tubulinea other_Eukaryota 564 2.95e-156   NTclustered gi|418968559|gb|KC164244.1| 5778 g28199 i0 100 100 305 0 100 0 1 305 68 372 Vermamoeba vermiformis clone CF3-181 18S ribosomal RNA gene, partial sequence blastn 30500 564 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
11402273 11402273 PRJNA744060_P_NODE_6229_length_634_cov_10.857398_g5909_i0 PRJNA744060 6229 634 10.857398 68.83590332 Vermamoeba 1260114 Tubulinea other_Eukaryota 1133 0   NTclustered gi|909719645|gb|KT185625.1| 5778 g5909 i0 98.896 77.981072555205 634 7 100 0 1 634 5550 4917 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 49440 1133 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13477575 13477575 PRJNA744060_P_NODE_9391_length_522_cov_2.681514_g9065_i0 PRJNA744060 9391 522 2.681514 13.99750308 Amoeba proteus 5775 Tubulinea other_Eukaryota 258 3.9099999999999996e-82   NR AAP88974.1 5775 g9065 i0 71.9 1.97126436781609 171 46 98.3 1 9 521 71 239 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 1029 258 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
14752461 14752461 PRJNA744060_P_NODE_47312_length_247_cov_9.126437_g46983_i0 PRJNA744060 47312 247 9.126437 22.54229939 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 446 8.759999999999998e-121   NTclustered gi|300078496|gb|GU001158.1| 5778 g46983 i0 99.19 3.06882591093117 247 2 100 0 1 247 3671 3425 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 758 446 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
16025583 16025583 PRJNA744060_P_NODE_16093_length_401_cov_1.929878_g15764_i0 PRJNA744060 16093 401 1.929878 7.73881078 Ptolemeba noxubium 1525730 Tubulinea other_Eukaryota 621 2.3399999999999996e-173   NTclustered gi|667752760|gb|KJ542109.1| 1525730 g15764 i0 98.854 76.2468827930175 349 3 87 1 1 348 1380 1728 Ptolemeba noxubium isolate Nx13-1a 18S ribosomal RNA gene, partial sequence blastn 30575 621 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Ptolemeba Ptolemeba noxubium
17301103 17301103 PRJNA744060_P_NODE_16414_length_397_cov_3.388889_g16085_i0 PRJNA744060 16414 397 3.388889 13.45388933 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 189 2.7799999999999992e-43   NTclustered gi|300078497|gb|GU001159.1| 200886 g16085 i0 85.405 44.1511335012594 185 23 46 4 1 183 4128 4310 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17528 189 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
21126196 21126196 PRJNA744060_P_NODE_53397_length_231_cov_8.531646_g53068_i0 PRJNA744060 53397 231 8.531646 19.70810226 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 427 2.9399999999999998e-115   NTclustered gi|909719645|gb|KT185625.1| 5778 g53068 i0 100 100.47619047619 231 0 100 0 1 231 4892 4662 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 23210 427 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24949498 24949498 PRJNA744060_P_NODE_1640_length_1149_cov_4.878253_g1456_i0 PRJNA744060 1640 1149 4.878253 56.05112697 Copromyxa protea 931554 Tubulinea other_Eukaryota 530 1.77e-184   NR BAN33737.1 931554 g1456 i0 77.1 3.45169712793734 336 71 86.2 1 1148 159 129 464 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 3966 530 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
29336437 29336437 PRJNA744060_P_NODE_5829_length_655_cov_2.761168_g5512_i0 PRJNA744060 5829 655 2.761168 18.0856504 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 206 4.8399999999999994e-61   NR AAD37351.1 5775 g5512 i0 58 2.01068702290076 219 89 99.8 3 2 655 150 366 AAD37351.1 pepstatin-insensitive carboxyl proteinase 1, partial [Amoeba proteus] diamond 1317 206 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
32085774 32085774 PRJNA744060_P_NODE_23798_length_333_cov_1.038462_g23469_i0 PRJNA744060 23798 333 1.038462 3.45807846 Euamoebida 180229 Tubulinea other_Eukaryota 145 2.0099999999999998e-40   NR AFX73090.1 160823 g23469 i0 62.7 1.98198198198198 110 36 99.1 2 2 331 62 166 AFX73090.1 elongation factor 2 alpha, partial [Chaos carolinense] diamond 660 145 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Chaos Chaos carolinense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;