RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA743294", tax_phylum = "Promethearchaeota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 5 ✖

tax_phylum 1

  • Promethearchaeota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA743294 · 5 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27557968 27557968 PRJNA743294_P_NODE_60004_length_219_cov_4.006849_g59548_i0 PRJNA743294 60004 219 4.006849 8.77499931 Promethearchaeia archaeon 3067280 Archaea Archaea 65.9 1.93e-10   NR HEY0087995.1 3067280 g59548 i0 49.3 1.83561643835616 67 34 91.8 0 10 210 203 269 HEY0087995.1 SLC13 family permease [Promethearchaeia archaeon] diamond 402 65.9 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia       Promethearchaeia archaeon
27842126 27842126 PRJNA743294_P_NODE_25104_length_329_cov_0.914062_g24648_i0 PRJNA743294 25104 329 0.914062 3.00726398 Promethearchaeota archaeon 2053489 Archaea Archaea 73.2 2.2e-13   NR TFG16269.1 2053489 g24648 i0 42.7 0.747720364741641 82 46 74.8 1 9 254 100 180 TFG16269.1 MAG: GTP-binding protein [Promethearchaeota archaeon] diamond 246 73.2 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
28252701 28252701 PRJNA743294_P_NODE_31126_length_299_cov_1.380531_g30670_i0 PRJNA743294 31126 299 1.380531 4.12778769 Promethearchaeota archaeon 2053489 Archaea Archaea 60.8 1.06e-9   NR MBN1802604.1 2053489 g30670 i0 47.1 0.682274247491639 68 33 67.2 2 1 201 12 77 MBN1802604.1 cold-shock protein [Promethearchaeota archaeon] diamond 204 60.8 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
29831449 29831449 PRJNA743294_P_NODE_30631_length_301_cov_1.807018_g30175_i0 PRJNA743294 30631 301 1.807018 5.43912418 Promethearchaeota archaeon 2053489 Archaea Archaea 43.1 0.0452   NR MBY8985246.1 2053489 g30175 i0 34.2 0.727574750830565 73 46 70.8 1 268 56 68 140 MBY8985246.1 HEAT repeat domain-containing protein [Promethearchaeota archaeon] diamond 219 43.1 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon
31538134 31538134 PRJNA743294_P_NODE_36076_length_281_cov_1.432692_g35620_i0 PRJNA743294 36076 281 1.432692 4.02586452 Promethearchaeota archaeon 2053489 Archaea Archaea 61.2 1.91e-8   NR TFG24093.1 2053489 g35620 i0 39.1 2.79715302491103 87 46 86.5 3 280 38 1457 1542 TFG24093.1 MAG: hypothetical protein EU529_05205 [Promethearchaeota archaeon] diamond 786 61.2 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;