RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA743294" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA743294 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29768246 29768246 PRJNA743294_P_NODE_56811_length_241_cov_3.416667_g56355_i0 PRJNA743294 56811 241 3.416667 8.23416747 Acholeplasmataceae bacterium 1898209 Bacteria Bacteria 68.9 7.62e-12   NR NLL68716.1 1898209 g56355 i0 54.9 2.75103734439834 51 23 63.5 0 206 54 3 53 NLL68716.1 tryptophan--tRNA ligase [Acholeplasmataceae bacterium] diamond 663 68.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae   Acholeplasmataceae bacterium
31632772 31632772 PRJNA743294_P_NODE_26456_length_321_cov_1.701613_g26000_i0 PRJNA743294 26456 321 1.701613 5.46217773 Liberiplasma polymorphum 3374570 Bacteria Bacteria 77 6.46e-14   NR MFH5882238.1 3374570 g26000 i0 42 1.51401869158878 81 47 75.7 0 244 2 158 238 MFH5882238.1 MalY/PatB family protein [Candidatus Izemoplasmataceae bacterium C05PYG] diamond 486 77 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Liberiplasmatales Liberiplasmataceae Liberiplasma Liberiplasma polymorphum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;