contig_metadata
9 rows where bioproject = "PRJNA743294", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3750063 | 3750063 | PRJNA743294_P_NODE_41103_length_266_cov_1.000000_g40647_i0 | PRJNA743294 | 41103 | 266 | 1 | 2.66 | Bacteria | 2 | Bacteria | Bacteria | 268 | 2.22e-67 | NTclustered | gi|95115285|gb|DQ501327.1| | 34034 | g40647 | i0 | 84.906 | 74.7669172932331 | 265 | 40 | 99 | 0 | 2 | 266 | 1192 | 1456 | Uncultured delta proteobacterium clone ST11-13 16S ribosomal RNA gene, partial sequence | blastn | 19888 | 268 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium | ||||||
| 16024676 | 16024676 | PRJNA743294_P_NODE_39633_length_270_cov_1.350254_g39177_i0 | PRJNA743294 | 39633 | 270 | 1.350254 | 3.6456858 | uncultured delta proteobacterium | 34034 | Bacteria | Bacteria | 248 | 2.94e-61 | NTclustered | gi|374854163|dbj|AP011765.1| | 34034 | g39177 | i0 | 85.02 | 674.811111111111 | 247 | 34 | 91 | 3 | 26 | 270 | 12468 | 12713 | Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 | blastn | 182199 | 248 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium | ||||||
| 26704197 | 26704197 | PRJNA743294_P_NODE_28281_length_312_cov_1.305439_g27825_i0 | PRJNA743294 | 28281 | 312 | 1.305439 | 4.07296968 | Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9 | 1973968 | Bacteria | Bacteria | 77.4 | 1.18e-14 | NR | PJB33164.1 | 1973968 | g27825 | i0 | 51.3 | 2.88461538461538 | 76 | 37 | 73.1 | 0 | 37 | 264 | 166 | 241 | PJB33164.1 MAG: DUF4197 domain-containing protein [Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9] | diamond | 900 | 77.4 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9 | ||||||
| 28442405 | 28442405 | PRJNA743294_P_NODE_6166_length_624_cov_2.695100_g5716_i0 | PRJNA743294 | 6166 | 624 | 2.6951 | 16.817424 | delta proteobacterium ML8_F1 | 1775671 | Bacteria | Bacteria | 123 | 7.999999999999998e-30 | NR | OPL09242.1 | 1775671 | g5716 | i0 | 37 | 1.59615384615385 | 165 | 102 | 79.3 | 1 | 129 | 623 | 34 | 196 | OPL09242.1 MAG: threonine aldolase [delta proteobacterium ML8_F1] | diamond | 996 | 123 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | delta proteobacterium ML8_F1 | ||||||
| 28610204 | 28610204 | PRJNA743294_P_NODE_25147_length_328_cov_3.145098_g24691_i0 | PRJNA743294 | 25147 | 328 | 3.145098 | 10.31592144 | Bacteria | 2 | Bacteria | Bacteria | 43.9 | 0.0399 | NR | OIP36672.1 | 1805126 | g24691 | i0 | 37 | 1.48170731707317 | 81 | 43 | 66.8 | 3 | 258 | 40 | 414 | 494 | OIP36672.1 MAG: hypothetical protein AUK47_14735 [Deltaproteobacteria bacterium CG2_30_63_29] | diamond | 486 | 43.9 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium CG2_30_63_29 | ||||||
| 29326169 | 29326169 | PRJNA743294_P_NODE_20749_length_357_cov_3.507042_g20293_i0 | PRJNA743294 | 20749 | 357 | 3.507042 | 12.52013994 | Deltaproteobacteria bacterium RIFCSPHIGHO2_ | 2026735 | Bacteria | Bacteria | 54.3 | 1.06e-5 | NR | OGQ05465.1 | 1797856 | g20293 | i0 | 44.8 | 0.563025210084034 | 67 | 31 | 51.3 | 2 | 296 | 114 | 149 | 215 | OGQ05465.1 MAG: molecular chaperone DnaJ [Deltaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_43_49] | diamond | 201 | 54.3 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RIFCSPHIGHO2_01_FULL_43_49 | ||||||
| 30505085 | 30505085 | PRJNA743294_P_NODE_4253_length_735_cov_1.858006_g3845_i0 | PRJNA743294 | 4253 | 735 | 1.858006 | 13.6563441 | Bacteria | 2 | Bacteria | Bacteria | 75.9 | 1.37e-11 | NR | OGQ89419.1 | 1797895 | g3845 | i0 | 39.9 | 1.33061224489796 | 163 | 87 | 63.3 | 6 | 8 | 472 | 1786 | 1945 | OGQ89419.1 MAG: hypothetical protein A2289_07420 [Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15] | diamond | 978 | 75.9 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 | ||||||
| 31032349 | 31032349 | PRJNA743294_P_NODE_48855_length_250_cov_0.881356_g48399_i0 | PRJNA743294 | 48855 | 250 | 0.881356 | 2.20339 | Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_6 | 2026735 | Bacteria | Bacteria | 42.7 | 0.0388 | NR | OGQ80239.1 | 1797894 | g48399 | i0 | 35.9 | 0.768 | 64 | 34 | 74.4 | 2 | 224 | 39 | 50 | 108 | OGQ80239.1 MAG: protoporphyrinogen oxidase [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19] | diamond | 192 | 42.7 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19 | ||||||
| 32676210 | 32676210 | PRJNA743294_P_NODE_50220_length_248_cov_2.582857_g49764_i0 | PRJNA743294 | 50220 | 248 | 2.582857 | 6.40548536 | Deltaproteobacteria bacterium Smac51 | 2946587 | Bacteria | Bacteria | 48.9 | 2.53e-4 | NR | UQZ89024.1 | 2946587 | g49764 | i0 | 51.6 | 0.375 | 31 | 15 | 37.5 | 0 | 68 | 160 | 143 | 173 | UQZ89024.1 hypothetical protein C4J81_07355 [Deltaproteobacteria bacterium Smac51] | diamond | 93 | 48.9 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium Smac51 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;