RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA743294", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 7 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 7 ✖

bioproject 1

  • PRJNA743294 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
722088 722088 PRJNA743294_P_NODE_41461_length_264_cov_9.743455_g41005_i0 PRJNA743294 41461 264 9.743455 25.7227212 Methanobacterium ferruginis 710191 Archaea Archaea 370 5.86e-98   NTclustered gi|2465756734|dbj|AP027738.1| 710191 g41005 i0 92.366 126.011363636364 262 16 98 4 1 260 35426 35167 Methanobacterium ferruginis NBRC 105197 DNA, complete genome blastn 33267 370 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium ferruginis
13475753 13475753 PRJNA743294_P_NODE_151_length_2415_cov_10.653715_g109_i0 PRJNA743294 151 2415 10.653715 257.28721725 Methanobacterium alcaliphilum 392018 Archaea Archaea 3738 0   NTclustered gi|584298067|gb|KF882006.1| 392018 g109 i0 94.7 172.520082815735 2415 115 99 12 5 2407 2645 232 Methanobacterium alcaliphilum strain WeN4 23S ribosomal RNA gene, partial sequence blastn 416636 3738 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium alcaliphilum
13475827 13475827 PRJNA743294_P_NODE_2431_length_944_cov_8.580941_g2108_i0 PRJNA743294 2431 944 8.580941 81.00408304 Methanobacterium flexile 490098 Archaea Archaea 1735 0   NTclustered gi|1161053746|gb|KY780618.1| 490098 g2108 i0 100 95.1239406779661 939 0 99 0 6 944 1 939 Methanobacterium flexile strain Z-7215 16S ribosomal RNA gene, partial sequence blastn 89797 1735 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium flexile
20324798 20324798 PRJNA743294_P_NODE_52996_length_245_cov_2.686047_g52540_i0 PRJNA743294 52996 245 2.686047 6.58081515 Methanobacterium 2160 Archaea Archaea 294 3.33e-75   NTclustered gi|2874253877|emb|OY969932.1| 176233 g52540 i0 89.655 81.9102040816327 232 23 95 1 2 233 29474 29704 MAG: uncultured Methanobacteriaceae archaeon isolate MFD09286.bin.c.5 genome assembly, chromosome: 1 blastn 20068 296 0.993243243243243 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
20324819 20324819 PRJNA743294_P_NODE_9276_length_517_cov_7.722973_g8820_i0 PRJNA743294 9276 517 7.722973 39.92777041 Methanobacterium 2160 Archaea Archaea 939 0   NTclustered gi|76443580|dbj|AB236053.1| 176233 g8820 i0 100 102.007736943907 508 0 98 0 1 508 822 1329 Uncultured Methanobacteriaceae archaeon gene for 16S rRNA, partial sequence, clone:NR-H2-A blastn 52738 944 0.994703389830508 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
28979156 28979156 PRJNA743294_P_NODE_58548_length_232_cov_2.698113_g58092_i0 PRJNA743294 58548 232 2.698113 6.25962216 Methanopyri archaeon 2599940 Archaea Archaea 72.4 1.15e-12   NR NPB02643.1 2599940 g58092 i0 48.1 0.995689655172414 77 40 99.6 0 2 232 394 470 NPB02643.1 ribosome biogenesis/translation initiation ATPase RLI [Methanopyri archaeon] diamond 231 72.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanopyri       Methanopyri archaeon
31538154 31538154 PRJNA743294_P_NODE_4676_length_704_cov_2.076070_g4254_i0 PRJNA743294 4676 704 2.07607 14.6155328 Methanosphaera sp. 2666342 Archaea Archaea 57 2.24e-5   NR MEE3325473.1 2666342 g4254 i0 27.2 1.51704545454545 173 100 69.5 8 702 214 532 688 MEE3325473.1 hypothetical protein [Methanosphaera sp.] diamond 1068 57 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;