RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA743294", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA743294 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26609222 26609222 PRJNA743294_P_NODE_46001_length_253_cov_1.800000_g45545_i0 PRJNA743294 46001 253 1.8 4.554 Chloroherpetonaceae bacterium 2969135 Bacteria Bacteria 74.7 6.25e-15   NR MFN3561789.1 2969135 g45545 i0 55.9 2.52569169960474 68 30 80.6 0 48 251 8 75 MFN3561789.1 30S ribosomal protein S9 [Chloroherpetonaceae bacterium] diamond 639 74.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chloroherpetonaceae   Chloroherpetonaceae bacterium
32170923 32170923 PRJNA743294_P_NODE_8018_length_554_cov_2.900208_g7563_i0 PRJNA743294 8018 554 2.900208 16.06715232 Chlorobiota bacterium 2268192 Bacteria Bacteria 83.6 5.79e-17   NR NPA42925.1 2268192 g7563 i0 47.6 2.29061371841155 82 43 44.4 0 373 128 9 90 NPA42925.1 30S ribosomal protein S9 [Chlorobiota bacterium] diamond 1269 83.6 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;