RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA741997" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA741997 · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7100404 7100404 PRJNA741997_P_NODE_81766_length_245_cov_2.238372_g80646_i0 PRJNA741997 81766 245 2.238372 5.4840114 Amoeba proteus 5775 Tubulinea other_Eukaryota 140 5.7e-38   NR AAB50563.3 5775 g80646 i0 87 0.942857142857143 77 10 94.3 0 10 240 257 333 AAB50563.3 S-adenosylmethionine synthetase, partial [Amoeba proteus] diamond 231 140 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
7576112 7576112 PRJNA741997_P_NODE_86186_length_243_cov_0.905882_g85066_i0 PRJNA741997 86186 243 0.905882 2.20129326 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 283 7.14e-72   NTclustered gi|423291974|gb|JQ519432.1| 5778 g85066 i0 87.654 103.847736625514 243 30 100 0 1 243 622 380 Vermamoeba vermiformis clone JG10.89_a2 actin gene, partial cds blastn 25235 283 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
10126793 10126793 PRJNA741997_P_NODE_32608_length_381_cov_2.250000_g31488_i0 PRJNA741997 32608 381 2.25 8.5725 Vermamoeba 1260114 Tubulinea other_Eukaryota 604 2.219999999999999e-168   NTclustered gi|909719645|gb|KT185625.1| 5778 g31488 i0 95.276 42.3438320209974 381 18 100 0 1 381 5760 5380 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 16133 610 0.99016393442623 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
13475313 13475313 PRJNA741997_P_NODE_42651_length_332_cov_3.243243_g41531_i0 PRJNA741997 42651 332 3.243243 10.76756676 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 536 7.079999999999999e-148   NTclustered gi|909719645|gb|KT185625.1| 5778 g41531 i0 95.808 19.7349397590361 334 10 100 4 1 332 6769 7100 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 6552 536 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22398787 22398787 PRJNA741997_P_NODE_22938_length_470_cov_3.594458_g21819_i0 PRJNA741997 22938 470 3.594458 16.8939526 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 824 0   NTclustered gi|300078496|gb|GU001158.1| 5778 g21819 i0 98.298 55.7617021276596 470 8 100 0 1 470 2248 2717 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 26208 824 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31189641 31189641 PRJNA741997_P_NODE_8795_length_884_cov_3.797781_g7878_i0 PRJNA741997 8795 884 3.797781 33.57238404 Amoeba proteus 5775 Tubulinea other_Eukaryota 152 1.85e-40   NR AKN09692.1 5775 g7878 i0 32.4 0.963800904977376 284 184 94.7 6 13 849 3 283 AKN09692.1 Tom40 [Amoeba proteus] diamond 852 152 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;