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contig_metadata

16 rows where bioproject = "PRJNA738523" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA738523 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5025980 5025980 PRJNA738523_P_NODE_12004_length_248_cov_1.760000_g11933_i0 PRJNA738523 12004 248 1.76 4.3648 Saprolegnia 4769 SAR_Eukaryotes SAR_Eukaryotes 193 1.27e-44   NTclustered gi|813233307|ref|XM_012358054.1| 695850 g11933 i0 82.143 38.0846774193548 224 40 90 0 4 227 284 61 Saprolegnia parasitica CBS 223.65 40S ribosomal protein S15a partial mRNA blastn 9445 193 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
7098287 7098287 PRJNA738523_P_NODE_8946_length_265_cov_1.348958_g8875_i0 PRJNA738523 8946 265 1.348958 3.5747387 Phytopythium vexans 907947 SAR_Eukaryotes SAR_Eukaryotes 252 2.22e-62   NTclustered gi|71063372|gb|DQ071321.1| 907947 g8875 i0 83.895 28.1358490566038 267 39 100 4 1 265 292 556 Pythium vexans strain NBRC100112 beta-tubulin gene, partial cds blastn 7456 252 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Phytopythium Phytopythium vexans
17297648 17297648 PRJNA738523_P_NODE_7154_length_282_cov_1.473684_g7083_i0 PRJNA738523 7154 282 1.473684 4.15578888 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 161 4.14e-35   NTclustered gi|2794921884|ref|XM_067881184.1| 164328 g7083 i0 81.633 12.4893617021277 196 34 69 2 9 203 196 390 Phytophthora ramorum 60S ribosomal protein L23 (KRP23_10704), partial mRNA blastn 3522 161 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
18571371 18571371 PRJNA738523_P_NODE_8595_length_268_cov_1.579487_g8524_i0 PRJNA738523 8595 268 1.579487 4.23302516 Saprolegnia parasitica 101203 SAR_Eukaryotes SAR_Eukaryotes 174 5.02e-39   NTclustered gi|813142527|ref|XM_012343931.1| 695850 g8524 i0 80.426 73.5746268656716 235 41 86 5 30 260 656 423 Saprolegnia parasitica CBS 223.65 60S ribosomal protein L3 mRNA blastn 19718 174 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia parasitica
23672510 23672510 PRJNA738523_P_NODE_10539_length_251_cov_0.865169_g10468_i0 PRJNA738523 10539 251 0.865169 2.17157419 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 196 9.93e-46   NTclustered gi|695372681|ref|XM_009516579.1| 67593 g10468 i0 82.174 95.5418326693227 230 39 91 2 7 235 633 861 Phytophthora sojae hypothetical protein mRNA blastn 23981 196 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
23672563 23672563 PRJNA738523_P_NODE_3979_length_345_cov_1.698529_g3908_i0 PRJNA738523 3979 345 1.698529 5.85992505 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 265 3.8499999999999995e-66   NTclustered gi|2794906124|ref|XM_067889988.1| 164328 g3908 i0 80.826 70.0840579710145 339 63 98 2 6 343 632 969 Phytophthora ramorum 60S ribosomal protein L3 (KRP23_4970), partial mRNA blastn 24179 265 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
27599913 27599913 PRJNA738523_P_NODE_8744_length_267_cov_1.304124_g8673_i0 PRJNA738523 8744 267 1.304124 3.48201108 Pythiaceae 4782 SAR_Eukaryotes SAR_Eukaryotes 65.1 6.41e-10   NR KAJ0410772.1 114742 g8673 i0 50 4.12359550561798 100 38 98.9 4 3 266 132 231 KAJ0410772.1 hypothetical protein ATCC90586_001401 [Pythium insidiosum] diamond 1101 65.5 0.993893129770992 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum
27905064 27905064 PRJNA738523_P_NODE_10825_length_251_cov_0.865169_g10754_i0 PRJNA738523 10825 251 0.865169 2.17157419 Phytophthora kernoviae 325452 SAR_Eukaryotes SAR_Eukaryotes 60.8 1.68e-8   NR KAG2519636.1 325452 g10754 i0 41.9 4.47011952191235 74 40 88.4 2 26 247 55 125 KAG2519636.1 hypothetical protein JM18_006761 [Phytophthora kernoviae] diamond 1122 60.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora kernoviae
28262626 28262626 PRJNA738523_P_NODE_13526_length_246_cov_0.890173_g13455_i0 PRJNA738523 13526 246 0.890173 2.18982558 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 87 8.75e-18   NR RHY06105.1 112090 g13455 i0 58 4.9390243902439 81 33 98.8 1 244 2 339 418 RHY06105.1 hypothetical protein DYB36_008297, partial [Aphanomyces astaci] diamond 1215 87 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
28473745 28473745 PRJNA738523_P_NODE_14446_length_244_cov_0.900585_g14375_i0 PRJNA738523 14446 244 0.900585 2.1974274 Nothophytophthora sp. Chile5 2483409 SAR_Eukaryotes SAR_Eukaryotes 45.4 0.00416   NR RLN92552.1 2483409 g14375 i0 40.7 1.65983606557377 54 31 65.2 1 159 1 206 259 RLN92552.1 hypothetical protein BBJ28_00007100 [Nothophytophthora sp. Chile5] diamond 405 45.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Nothophytophthora Nothophytophthora sp. Chile5
28547214 28547214 PRJNA738523_P_NODE_15887_length_241_cov_1.398810_g15816_i0 PRJNA738523 15887 241 1.39881 3.3711321 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 48.1 3.98e-4   NR KAH9197853.1 100861 g15816 i0 41.8 1.50622406639004 67 31 77.2 2 210 25 26 89 KAH9197853.1 hypothetical protein AeNC1_000130 [Aphanomyces euteiches] diamond 363 48.1 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
29020888 29020888 PRJNA738523_P_NODE_14368_length_244_cov_0.900585_g14297_i0 PRJNA738523 14368 244 0.900585 2.1974274 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 91.3 5.41e-20   NR KAE9210719.1 53985 g14297 i0 54.3 5.7172131147541 81 37 99.6 0 1 243 185 265 KAE9210719.1 hypothetical protein PF005_g11305 [Phytophthora fragariae] diamond 1395 91.7 0.995637949836423 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
31126351 31126351 PRJNA738523_P_NODE_11755_length_249_cov_0.875000_g11684_i0 PRJNA738523 11755 249 0.875 2.17875 Hyaloperonospora brassicae 162125 SAR_Eukaryotes SAR_Eukaryotes 61.2 1.18e-8   NR CAI5722649.1 162125 g11684 i0 48.6 0.867469879518072 72 30 86.7 3 26 241 204 268 CAI5722649.1 unnamed protein product [Hyaloperonospora brassicae] diamond 216 61.2 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora brassicae
32528941 32528941 PRJNA738523_P_NODE_11679_length_249_cov_0.875000_g11608_i0 PRJNA738523 11679 249 0.875 2.17875 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 87.4 7.45e-18   NR XP_024585157.1 4781 g11608 i0 66.7 2.02409638554217 54 18 65.1 0 231 70 489 542 XP_024585157.1 propionyl-carboxylase beta mitochondrial [Plasmopara halstedii] diamond 504 87.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
32749314 32749314 PRJNA738523_P_NODE_11500_length_249_cov_1.698864_g11429_i0 PRJNA738523 11500 249 1.698864 4.23017136 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 46.6 0.00174   NR OQR81620.1 74557 g11429 i0 42 3.49397590361446 50 29 60.2 0 21 170 130 179 OQR81620.1 wu:fk36e11 [Thraustotheca clavata] diamond 870 47 0.991489361702128 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
32770599 32770599 PRJNA738523_P_NODE_13360_length_246_cov_0.890173_g13289_i0 PRJNA738523 13360 246 0.890173 2.18982558 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 85.9 2.47e-17   NR TYZ68759.1 1485010 g13289 i0 55.6 0.98780487804878 81 36 98.8 0 3 245 281 361 TYZ68759.1 hypothetical protein PybrP1_007006 [[Pythium] brassicae (nom. inval.)] diamond 243 85.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;