RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA738523" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA738523 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26925910 26925910 PRJNA738523_P_NODE_12482_length_248_cov_0.880000_g12411_i0 PRJNA738523 12482 248 0.88 2.1824 Victivallis sp. Marseille-Q1 2049020 Bacteria Bacteria 42.7 0.0408   NR WP_176013793.1 2717288 g12411 i0 32.9 0.919354838709677 76 48 91.9 2 11 238 1426 1498 WP_176013793.1 beta-galactosidase [Victivallis sp. Marseille-Q1083] diamond 228 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae Victivallis Victivallis sp. Marseille-Q1083
28189235 28189235 PRJNA738523_P_NODE_15186_length_243_cov_0.905882_g15115_i0 PRJNA738523 15186 243 0.905882 2.20129326 Victivallales bacterium 2212475 Bacteria Bacteria 47 0.00114   NR MBT7302852.1 2212475 g15115 i0 42.9 1.38271604938272 56 32 69.1 0 20 187 361 416 MBT7302852.1 hypothetical protein [Victivallales bacterium] diamond 336 47 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales     Victivallales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;