RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA738523", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA738523 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30937299 30937299 PRJNA738523_P_NODE_13814_length_245_cov_0.895349_g13743_i0 PRJNA738523 13814 245 0.895349 2.19360505 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 84.3 8.73e-17   NR HEY8902023.1 2201154 g13743 i0 58.1 0.906122448979592 74 29 90.6 1 2 223 858 929 HEY8902023.1 ATP-binding protein [Chthoniobacterales bacterium] diamond 222 84.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
31348164 31348164 PRJNA738523_P_NODE_16496_length_232_cov_2.930818_g16425_i0 PRJNA738523 16496 232 2.930818 6.79949776 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.9 0.00902   NR MEI6341235.1 2026799 g16425 i0 36 0.969827586206897 75 39 85.3 2 10 207 84 158 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 225 43.9 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;