RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where bioproject = "PRJNA738523" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

analysis 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA738523 · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3270882 3270882 PRJNA738523_P_NODE_2863_length_392_cov_1.297806_g2792_i0 PRJNA738523 2863 392 1.297806 5.08739952 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 291 7.3e-74   NTclustered gi|470437282|ref|XM_004338924.1| 1257118 g2792 i0 80.457 85.280612244898 394 65 98 11 2 386 534 924 Acanthamoeba castellanii str. Neff adenine nucleotide translocator, putative (ACA1_128450), partial mRNA blastn 33430 291 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12198939 12198939 PRJNA738523_P_NODE_5170_length_315_cov_1.041322_g5099_i0 PRJNA738523 5170 315 1.041322 3.2801643 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 222 2.1199999999999998e-53   NTclustered gi|470508903|ref|XM_004349597.1| 1257118 g5099 i0 80.064 33.8063492063492 311 52 97 9 3 308 1118 813 Acanthamoeba castellanii str. Neff ATPdependent RNA helicase dbp2, putative (ACA1_142620), partial mRNA blastn 10649 222 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26799254 26799254 PRJNA738523_P_NODE_6821_length_286_cov_1.187793_g6750_i0 PRJNA738523 6821 286 1.187793 3.39708798 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 63.9 2.23e-9   NR XP_004341947.1 1257118 g6750 i0 44.3 0.828671328671329 79 40 78.7 1 13 237 564 642 XP_004341947.1 gelation factor, putative [Acanthamoeba castellanii str. Neff] diamond 237 63.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27052578 27052578 PRJNA738523_P_NODE_4202_length_339_cov_1.112782_g4131_i0 PRJNA738523 4202 339 1.112782 3.77233098 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.1 2.01e-5   NR XP_004342335.1 1257118 g4131 i0 42.9 0.433628318584071 49 28 43.4 0 182 36 19 67 XP_004342335.1 uncharacterized protein ACA1_116980 [Acanthamoeba castellanii str. Neff] diamond 147 50.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27305481 27305481 PRJNA738523_P_NODE_7143_length_282_cov_1.688995_g7072_i0 PRJNA738523 7143 282 1.688995 4.7629659 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 55.1 2.62e-6   NR XP_004344773.1 1257118 g7072 i0 35.5 2.02127659574468 93 49 97.9 4 6 281 276 358 XP_004344773.1 dual specificity protein kinase shka, putative [Acanthamoeba castellanii str. Neff] diamond 570 55.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27400261 27400261 PRJNA738523_P_NODE_4643_length_328_cov_1.156863_g4572_i0 PRJNA738523 4643 328 1.156863 3.79451064 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 88.2 9.72e-20   NR XP_004349605.1 1257118 g4572 i0 40.2 0.932926829268293 102 60 92.4 1 328 26 28 129 XP_004349605.1 uncharacterized protein ACA1_142080 [Acanthamoeba castellanii str. Neff] diamond 306 88.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27652875 27652875 PRJNA738523_P_NODE_12464_length_248_cov_0.880000_g12393_i0 PRJNA738523 12464 248 0.88 2.1824 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 76.3 7.93e-16   NR XP_004335678.1 1257118 g12393 i0 48.1 2.06854838709677 81 41 98 1 3 245 21 100 XP_004335678.1 mitochondrial import inner membrane translocase subunit tim16, putative, partial [Acanthamoeba castellanii str. Neff] diamond 513 76.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27716263 27716263 PRJNA738523_P_NODE_15824_length_241_cov_1.833333_g15753_i0 PRJNA738523 15824 241 1.833333 4.41833253 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.4 0.00402   NR XP_004352763.1 1257118 g15753 i0 54.5 0.547717842323652 44 20 54.8 0 137 6 474 517 XP_004352763.1 Dual specificity protein kinase [Acanthamoeba castellanii str. Neff] diamond 132 45.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28000286 28000286 PRJNA738523_P_NODE_9125_length_263_cov_1.621053_g9054_i0 PRJNA738523 9125 263 1.621053 4.26336939 Cavenderia fasciculata 261658 Evosea other_Eukaryota 112 2.07e-26   NR XP_004354613.1 261658 g9054 i0 76.4 3.18250950570342 72 17 82.1 0 218 3 601 672 XP_004354613.1 3-oxoacid CoA-transferase [Cavenderia fasciculata] diamond 837 112 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
28031730 28031730 PRJNA738523_P_NODE_5045_length_318_cov_0.877551_g4974_i0 PRJNA738523 5045 318 0.877551 2.79061218 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 52.4 3.26e-5   NR XP_004341500.1 1257118 g4974 i0 69.7 1.5 33 10 31.1 0 317 219 278 310 XP_004341500.1 BTB/POZ domain containing protein [Acanthamoeba castellanii str. Neff] diamond 477 52.4 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28537040 28537040 PRJNA738523_P_NODE_12487_length_248_cov_0.880000_g12416_i0 PRJNA738523 12487 248 0.88 2.1824 Amoeba proteus 5775 Tubulinea other_Eukaryota 130 7.139999999999999e-35   NR AFX84537.1 5775 g12416 i0 70.7 0.991935483870968 82 24 99.2 0 246 1 184 265 AFX84537.1 alpha tubulin, partial [Amoeba proteus] diamond 246 130 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
28757744 28757744 PRJNA738523_P_NODE_10367_length_251_cov_2.792135_g10296_i0 PRJNA738523 10367 251 2.792135 7.00825885 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 53.1 8.86e-6   NR KAH3767700.1 1580589 g10296 i0 37.3 0.99203187250996006 83 48 96.8 2 251 9 667 747 KAH3767700.1 gelation factor [Pelomyxa schiedti] diamond 249 53.1 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28820654 28820654 PRJNA738523_P_NODE_11508_length_249_cov_1.664773_g11437_i0 PRJNA738523 11508 249 1.664773 4.14528477 Dictyostelium purpureum 5786 Evosea other_Eukaryota 68.9 2.3e-11   NR XP_003283666.1 5786 g11437 i0 39.7 0.939759036144578 78 44 94 1 14 247 407 481 XP_003283666.1 uncharacterized protein DICPUDRAFT_147400 [Dictyostelium purpureum] diamond 234 68.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
29052299 29052299 PRJNA738523_P_NODE_12188_length_248_cov_0.880000_g12117_i0 PRJNA738523 12188 248 0.88 2.1824 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 72 2.33e-13   NR XP_004358287.1 1257118 g12117 i0 62.1 1.40322580645161 58 21 69 1 247 77 122 179 XP_004358287.1 eukaryotic ribosomal protein L18, putative [Acanthamoeba castellanii str. Neff] diamond 348 72.4 0.994475138121547 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32392053 32392053 PRJNA738523_P_NODE_9119_length_263_cov_1.621053_g9048_i0 PRJNA738523 9119 263 1.621053 4.26336939 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 79 6.1e-15   NR KAH3757648.1 1580589 g9048 i0 48.8 0.958174904942966 84 42 94.7 1 259 11 223 306 KAH3757648.1 structural constituent of cytoskeleton [Pelomyxa schiedti] diamond 252 79 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;