RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA737474" and tax_phylum = "Deferribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA737474 · 10 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25707093 25707093 PRJNA737474c_S_NODE_18194_length_284_cov_1.843602_g17363_i0 PRJNA737474 18194 284 1.843602 5.23582968 Deferribacter 53572 Bacteria Bacteria 116 7.600000000000001e-28   NR WP_013008327.1 197162 g17363 i0 60.9 3.67605633802817 87 34 91.9 0 22 282 356 442 WP_013008327.1 DUF3373 family protein [Deferribacter desulfuricans] diamond 1044 116 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Deferribacteraceae Deferribacter Deferribacter desulfuricans
26443149 26443149 PRJNA737474c_S_NODE_16695_length_292_cov_1.657534_g15864_i0 PRJNA737474 16695 292 1.657534 4.83999928 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 183 1.15e-54   NR WP_013451327.1 477976 g15864 i0 96.9 1.99315068493151 97 3 99.7 0 291 1 192 288 WP_013451327.1 type IV pilus twitching motility protein PilT [Calditerrivibrio nitroreducens] diamond 582 183 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens
32969946 32969946 PRJNA737474b_S_NODE_22826_length_336_cov_1.395437_g21787_i0 PRJNA737474 22826 336 1.395437 4.68866832 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 179 4.2299999999999986e-55   NR WP_013451657.1 477976 g21787 i0 94.4 0.803571428571429 90 5 80.4 0 1 270 73 162 WP_013451657.1 RNA chaperone Hfq [Calditerrivibrio nitroreducens] diamond 270 179 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens
32986885 32986885 PRJNA737474b_S_NODE_20523_length_354_cov_1.306050_g19484_i0 PRJNA737474 20523 354 1.30605 4.623417 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 194 6.959999999999998e-55   NR WP_013450347.1 477976 g19484 i0 93.5 0.915254237288136 108 7 91.5 0 3 326 1034 1141 WP_013450347.1 hypothetical protein [Calditerrivibrio nitroreducens] diamond 324 194 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens
33003902 33003902 PRJNA737474b_S_NODE_27507_length_306_cov_2.922747_g26468_i0 PRJNA737474 27507 306 2.922747 8.94360582 Denitrovibrio sp. 2053308 Bacteria Bacteria 123 2.8499999999999995e-31   NR PLX71695.1 2053308 g26468 i0 58.1 1.69607843137255 86 36 84.3 0 4 261 238 323 PLX71695.1 MAG: cytochrome C [Denitrovibrio sp.] diamond 519 123 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Denitrovibrio Denitrovibrio sp.
33055035 33055035 PRJNA737474b_S_NODE_23781_length_329_cov_2.386719_g22742_i0 PRJNA737474 23781 329 2.386719 7.85230551 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 140 2.1e-40   NR WP_171789014.1 477976 g22742 i0 77 0.793313069908815 87 20 79.3 0 323 63 54 140 WP_171789014.1 ATP-binding protein [Calditerrivibrio nitroreducens] diamond 261 140 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens
33055108 33055108 PRJNA737474b_S_NODE_32693_length_283_cov_1.090476_g31654_i0 PRJNA737474 32693 283 1.090476 3.08604708 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 154 3.0499999999999998e-46   NR WP_013450762.1 477976 g31654 i0 83.9 0.985865724381625 93 15 98.6 0 3 281 8 100 WP_013450762.1 ExbD/TolR family protein [Calditerrivibrio nitroreducens] diamond 279 154 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens
33071991 33071991 PRJNA737474b_S_NODE_19237_length_365_cov_2.794521_g18198_i0 PRJNA737474 19237 365 2.794521 10.20000165 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 217 3.58e-70   NR WP_013450346.1 477976 g18198 i0 89 0.96986301369863 118 13 97 0 354 1 5 122 WP_013450346.1 flagellar assembly protein FliW [Calditerrivibrio nitroreducens] diamond 354 217 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens
33072090 33072090 PRJNA737474b_S_NODE_31293_length_289_cov_1.824074_g30254_i0 PRJNA737474 31293 289 1.824074 5.27157386 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 175 2.54e-50   NR WP_041723753.1 477976 g30254 i0 92.7 0.996539792387543 96 7 99.7 0 288 1 17 112 WP_041723753.1 NADH-quinone oxidoreductase subunit M [Calditerrivibrio nitroreducens] diamond 288 175 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens
33112100 33112100 PRJNA737474d_S_NODE_29750_length_280_cov_2.980676_g29156_i0 PRJNA737474 29750 280 2.980676 8.3458928 Calditerrivibrio 545865 Bacteria Bacteria 120 9.65e-32   NR PMP72720.1 477976 g29156 i0 59.8 2.95714285714286 92 37 98.6 0 276 1 114 205 PMP72720.1 MAG: dephospho-CoA kinase [Calditerrivibrio nitroreducens] diamond 828 121 0.991735537190083 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;