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contig_metadata

16 rows where bioproject = "PRJNA734348" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 16 ✖

tax_clade 1

bioproject 1

  • PRJNA734348 · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4547551 4547551 PRJNA734348_P_NODE_87204_length_254_cov_2.535912_g86506_i0 PRJNA734348 87204 254 2.535912 6.44121648 Saprolegniales 4763 SAR_Eukaryotes SAR_Eukaryotes 162 4.88e-44   NR OQS00308.1 74557 g86506 i0 90.5 19.8425196850394 84 8 99.2 0 253 2 223 306 OQS00308.1 ATP-dependent RNA helicase eIF4A, partial [Thraustotheca clavata] diamond 5040 162 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
5025655 5025655 PRJNA734348_P_NODE_57184_length_282_cov_2.421053_g56487_i0 PRJNA734348 57184 282 2.421053 6.82736946 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 521 1.6499999999999996e-143   NTclustered gi|166048041|emb|CU364162.1| 100861 g56487 i0 100 100.028368794326 282 0 100 0 1 282 196 477 Aphanomyces euteiches cDNA blastn 28208 521 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
13472096 13472096 PRJNA734348_P_NODE_44671_length_301_cov_2.771930_g43974_i0 PRJNA734348 44671 301 2.77193 8.3435093 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 501 2.31e-137   NTclustered gi|325194231|emb|FR825088.1| 890382 g43974 i0 96.678 1.37541528239203 301 10 100 0 1 301 365 665 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 414 501 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
14746422 14746422 PRJNA734348_P_NODE_142432_length_229_cov_2.064103_g141734_i0 PRJNA734348 142432 229 2.064103 4.72679587 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 294 3.07e-75   NTclustered gi|325195136|emb|FR825930.1| 890382 g141734 i0 89.627 2.96069868995633 241 12 100 7 1 229 403 164 Albugo laibachii Nc14, genomic contig CONTIG_2990_NC14_v4_499_54 blastn 678 294 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
17295248 17295248 PRJNA734348_P_NODE_126294_length_242_cov_2.958580_g125596_i0 PRJNA734348 126294 242 2.95858 7.1597636 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 243 1.2100000000000004e-59   NTclustered gi|325194423|emb|FR825253.1| 890382 g125596 i0 84.898 4.87603305785124 245 31 100 5 1 242 839 598 Albugo laibachii Nc14, genomic contig CONTIG_1950_NC14_v4_1284_22758 blastn 1180 243 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
18570022 18570022 PRJNA734348_P_NODE_41695_length_310_cov_2.565401_g40999_i0 PRJNA734348 41695 310 2.565401 7.9527431 Peronospora aparines 162109 SAR_Eukaryotes SAR_Eukaryotes 278 4.39e-70   NTclustered gi|23306501|gb|AY035484.1| 162109 g40999 i0 100 81.6483870967742 150 0 97 0 1 150 677 528 Peronospora aparines isolate MG 4-5 large subunit ribosomal RNA gene, partial sequence blastn 25311 278 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora aparines
26609022 26609022 PRJNA734348_P_NODE_143381_length_227_cov_3.551948_g142683_i0 PRJNA734348 143381 227 3.551948 8.06292196 Albugo laibachii Nc14 890382 SAR_Eukaryotes SAR_Eukaryotes 50.8 4.24e-5   NR CCA27515.1 890382 g142683 i0 58.1 0.568281938325991 43 17 55.5 1 52 177 380 422 CCA27515.1 hypothetical protein CHGG_03237 [Albugo laibachii Nc14] diamond 129 50.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
27273693 27273693 PRJNA734348_P_NODE_129623_length_242_cov_0.911243_g128925_i0 PRJNA734348 129623 242 0.911243 2.20520806 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 105 9.54e-28   NR KAF0724467.1 100861 g128925 i0 81.3 1.58677685950413 64 12 79.3 0 2 193 13 76 KAF0724467.1 hypothetical protein Ae201684_016874 [Aphanomyces euteiches] diamond 384 105 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
27400203 27400203 PRJNA734348_P_NODE_127923_length_242_cov_0.911243_g127225_i0 PRJNA734348 127923 242 0.911243 2.20520806 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 85.9 8.88e-18   NR OWZ08250.1 4795 g127225 i0 52.5 3.91735537190083 80 38 99.2 0 2 241 116 195 OWZ08250.1 Retrovirus-related Pol Polyprotein from transposon 17.6 [Phytophthora megakarya] diamond 948 85.9 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
29262727 29262727 PRJNA734348_P_NODE_113449_length_246_cov_0.890173_g112751_i0 PRJNA734348 113449 246 0.890173 2.18982558 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 48.9 2.57e-4   NR XP_008867870.1 157072 g112751 i0 38.7 0.914634146341463 75 43 91.5 2 21 245 723 794 XP_008867870.1 hypothetical protein H310_05039 [Aphanomyces invadans] diamond 225 48.9 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
29609950 29609950 PRJNA734348_P_NODE_68390_length_271_cov_1.989899_g67693_i0 PRJNA734348 68390 271 1.989899 5.39262629 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 165 2.1399999999999993e-46   NR OWZ15692.1 4795 g67693 i0 93.3 4.98154981549815 90 6 99.6 0 270 1 152 241 OWZ15692.1 Major Facilitator Superfamily (MFS) transporter [Phytophthora megakarya] diamond 1350 165 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya
29736312 29736312 PRJNA734348_P_NODE_106210_length_247_cov_2.454023_g105512_i0 PRJNA734348 106210 247 2.454023 6.06143681 Phytophthora fragariae 53985 SAR_Eukaryotes SAR_Eukaryotes 65.1 5.34e-10   NR KAE9345885.1 53985 g105512 i0 51.9 2.56275303643725 52 25 63.2 0 214 59 379 430 KAE9345885.1 Pre-mRNA-splicing factor [Phytophthora fragariae] diamond 633 65.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora fragariae
30979070 30979070 PRJNA734348_P_NODE_103114_length_248_cov_1.405714_g102416_i0 PRJNA734348 103114 248 1.405714 3.48617072 root 1 Root_unresolved Root_unresolved 47.8 5.65e-4   NR XP_008880287.1 157072 g102416 i0 41.1 10.5725806451613 56 33 67.7 0 169 2 126 181 XP_008880287.1 hypothetical protein H310_14250 [Aphanomyces invadans] diamond 2622 48.1 0.993762993762994 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
31294900 31294900 PRJNA734348_P_NODE_33955_length_334_cov_3.099617_g33259_i0 PRJNA734348 33955 334 3.099617 10.35272078 root 1 Root_unresolved Root_unresolved 206 2.5000000000000008e-65   NR KAL0582261.1 65357 g33259 i0 100 1.97604790419162 110 0 98.8 0 3 332 11 120 KAL0582261.1 hypothetical protein ABG067_007890, partial [Albugo candida] diamond 660 206 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
31358306 31358306 PRJNA734348_P_NODE_114036_length_245_cov_2.860465_g113338_i0 PRJNA734348 114036 245 2.860465 7.00813925 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 111 2.81e-26   NR XP_024573476.1 4781 g113338 i0 60.5 9.51428571428571 81 32 99.2 0 1 243 533 613 XP_024573476.1 dead deah box helicase [Plasmopara halstedii] diamond 2331 111 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
32865106 32865106 PRJNA734348_P_NODE_61360_length_278_cov_1.814634_g60663_i0 PRJNA734348 61360 278 1.814634 5.04468252 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 49.7 2.04e-4   NR OQS01009.1 74557 g60663 i0 59.6 0.507194244604317 47 19 50.7 0 44 184 484 530 OQS01009.1 hypothetical protein THRCLA_21647, partial [Thraustotheca clavata] diamond 141 49.7 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;