RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA734348" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA734348 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27400231 27400231 PRJNA734348_P_NODE_64503_length_275_cov_1.524752_g63806_i0 PRJNA734348 64503 275 1.524752 4.193068 Nitrospinota bacterium 2026769 Bacteria Bacteria 87 1.41e-17   NR MDH5509369.1 2026769 g63806 i0 45.1 1.98545454545455 91 50 99.3 0 1 273 30 120 MDH5509369.1 DEAD/DEAH box helicase [Nitrospinota bacterium] diamond 546 87 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
29578496 29578496 PRJNA734348_P_NODE_88270_length_253_cov_3.350000_g87572_i0 PRJNA734348 88270 253 3.35 8.4755 Candidatus Nitrohelix vancouverensis 2705534 Bacteria Bacteria 137 1.17e-38   NR QPJ66595.1 2705534 g87572 i0 74.7 1.9802371541502 83 21 98.4 0 2 250 11 93 QPJ66595.1 MAG: imidazoleglycerol-phosphate dehydratase HisB [Candidatus Nitrohelix vancouverensis] diamond 501 137 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Candidatus Nitrohelix Candidatus Nitrohelix vancouverensis
30621077 30621077 PRJNA734348_P_NODE_79353_length_261_cov_1.638298_g78655_i0 PRJNA734348 79353 261 1.638298 4.27595778 Nitrospina sp. 2024844 Bacteria Bacteria 56.2 8.44e-7   NR MBT4374554.1 2024844 g78655 i0 40.7 2.2183908045977 91 37 85.1 2 246 25 23 113 MBT4374554.1 hypothetical protein [Nitrospina sp.] diamond 579 56.2 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota Nitrospinia Nitrospinales Nitrospinaceae Nitrospina Nitrospina sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;