RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA734348" and tax_phylum = "Fibrobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA734348 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5822887 5822887 PRJNA734348_P_NODE_99925_length_249_cov_0.875000_g99227_i0 PRJNA734348 99925 249 0.875 2.17875 Fibrobacteria bacterium 2725311 Bacteria Bacteria 147 1.36e-40   NR MCD6024139.1 2725311 g99227 i0 87.5 0.963855421686747 80 10 96.4 0 8 247 204 283 MCD6024139.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Fibrobacteria bacterium] diamond 240 147 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
16019449 16019449 PRJNA734348_P_NODE_110453_length_246_cov_1.780347_g109755_i0 PRJNA734348 110453 246 1.780347 4.37965362 uncultured Fibrobacteria bacterium 1758207 Bacteria Bacteria 124 4.64e-24   NTclustered gi|2874253984|emb|OY970309.1| 1758207 g109755 i0 96.053 2.28455284552846 76 3 31 0 10 85 3635108 3635033 MAG: uncultured Fibrobacteria bacterium isolate MFD05502.bin.1.3 genome assembly, chromosome: 1 blastn 562 124 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       uncultured Fibrobacteria bacterium
29641505 29641505 PRJNA734348_P_NODE_132830_length_241_cov_0.916667_g132132_i0 PRJNA734348 132830 241 0.916667 2.20916747 Fibrobacteria bacterium 2725311 Bacteria Bacteria 126 3.26e-33   NR HNY31759.1 2725311 g132132 i0 100 1.44398340248963 58 0 72.2 0 66 239 1 58 HNY31759.1 DNA cytosine methyltransferase [Fibrobacteria bacterium] diamond 348 126 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;