RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA734348", tax_phylum = "Cossaviricota" and tax_superkingdom = "Viruses"

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analysis 2

tax_superkingdom 1

  • Viruses · 4 ✖

tax_phylum 1

  • Cossaviricota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA734348 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10922451 10922451 PRJNA734348_P_NODE_57129_length_282_cov_2.693780_g56432_i0 PRJNA734348 57129 282 2.69378 7.5964596 Human papillomavirus 10566 Viruses Viruses 516 7.67e-142   NTclustered gi|371486244|gb|JF966378.1| 10566 g56432 i0 99.645 1.28368794326241 282 1 100 0 1 282 6782 7063 Human papillomavirus isolate 915 F 06 008 CG2, complete genome blastn 362 516 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
10922917 10922917 PRJNA734348_P_NODE_83069_length_258_cov_1.421622_g82371_i0 PRJNA734348 83069 258 1.421622 3.66778476 Gammapapillomavirus 11 1513256 Viruses Viruses 472 1.52e-128   NTclustered gi|870702434|gb|KP692116.1| 1682341 g82371 i0 99.612 2 258 1 100 0 1 258 4516 4773 Human papillomavirus type 202 isolate HPV202, complete genome blastn 516 472 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Gammapapillomavirus Gammapapillomavirus 11
24943810 24943810 PRJNA734348_P_NODE_135000_length_240_cov_2.335329_g134302_i0 PRJNA734348 135000 240 2.335329 5.6047896 Human papillomavirus 10566 Viruses Viruses 427 3.07e-115   NTclustered gi|1559669707|gb|MH777252.2| 10566 g134302 i0 98.75 3.67083333333333 240 3 100 0 1 240 854 1093 MAG: Human papillomavirus isolate HPV-mSK_110, complete genome blastn 881 427 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
31980563 31980563 PRJNA734348_P_NODE_65338_length_274_cov_1.900498_g64641_i0 PRJNA734348 65338 274 1.900498 5.20736452 Forsythia suspensa parvo-like virus 2739858 Viruses Viruses 54.3 4.45e-6   NR QKK82944.1 2739858 g64641 i0 37 2.92335766423358 92 53 95.3 2 265 5 120 211 QKK82944.1 hypothetical protein 3 [Forsythia suspensa parvo-like virus] diamond 801 54.3 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Forsythia suspensa parvo-like virus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;