RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA734348", tax_phylum = "Artverviricota" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

  • Artverviricota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA734348 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23671206 23671206 PRJNA734348_P_NODE_38639_length_315_cov_1.070248_g37943_i0 PRJNA734348 38639 315 1.070248 3.3712812 Citrus endogenous pararetrovirus 1435008 Viruses Viruses 444 4.16e-120   NTclustered gi|565672283|gb|KF800045.1| 1435008 g37943 i0 92.063 3.93015873015873 315 25 100 0 1 315 213 527 Citrus endogenous pararetrovirus clone CB17-3, complete genome blastn 1238 444 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae   Citrus endogenous pararetrovirus
23672052 23672052 PRJNA734348_P_NODE_84239_length_257_cov_1.489130_g83541_i0 PRJNA734348 84239 257 1.48913 3.8270641 Gammaretrovirus murleu 3428959 Viruses Viruses 459 1.18e-124   NTclustered gi|18448741|gb|AF462057.1| 11801 g83541 i0 98.833 100.027237354086 257 3 100 0 1 257 3456 3200 Moloney murine leukemia virus neuropathogenic variant ts1-92b, complete genome blastn 25707 459 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;