RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA734348", tax_kingdom = "Thermotogati" and tax_phylum = "Thermotogota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermotogota · 4 ✖

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA734348 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13473065 13473065 PRJNA734348_P_NODE_95271_length_250_cov_1.689266_g94573_i0 PRJNA734348 95271 250 1.689266 4.223165 Thermosipho ferrireducens 2571116 Bacteria Bacteria 130 1.02e-25   NTclustered gi|2006729518|gb|CP071446.1| 2571116 g94573 i0 82.895 120.708 152 19 60 5 49 199 421132 421277 Thermosipho ferrireducens strain JL129W03 chromosome, complete genome blastn 30177 130 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Fervidobacteriaceae Thermosipho Thermosipho ferrireducens
22874628 22874628 PRJNA734348_P_NODE_29978_length_355_cov_2.521277_g29282_i0 PRJNA734348 29978 355 2.521277 8.95053335 Thermotoga 2335 Bacteria Bacteria 279 1.42e-70   NTclustered gi|806984312|ref|NG_042010.1| 93929 g29282 i0 83.121 426.946478873239 314 45 88 8 39 349 442 750 Thermotoga petrophila strain RKU-1 23S ribosomal RNA gene, complete sequence blastn 151566 279 1 Bacteria   Thermotogati Thermotogota Thermotogae Thermotogales Thermotogaceae Thermotoga Thermotoga petrophila
31822277 31822277 PRJNA734348_P_NODE_125597_length_243_cov_0.905882_g124899_i0 PRJNA734348 125597 243 0.905882 2.20129326 Mesotoga sp. UBA5847 1946859 Bacteria Bacteria 43.5 0.0179   NR WP_292595010.1 1946859 g124899 i0 36.5 0.641975308641975 52 32 64.2 1 87 242 1 51 WP_292595010.1 TIGR02391 family protein [Mesotoga sp. UBA5847] diamond 156 43.5 1 Bacteria   Thermotogati Thermotogota Thermotogae Kosmotogales Kosmotogaceae Mesotoga Mesotoga sp. UBA5847
32455463 32455463 PRJNA734348_P_NODE_119739_length_244_cov_0.900585_g119041_i0 PRJNA734348 119739 244 0.900585 2.1974274 Thermotogota bacterium 2053689 Bacteria Bacteria 118 1.4199999999999998e-31   NR MDY6895180.1 2053689 g119041 i0 69.7 2.84016393442623 76 22 93.4 1 6 233 5 79 MDY6895180.1 DNA cytosine methyltransferase [Thermotogota bacterium] diamond 693 118 1 Bacteria   Thermotogati Thermotogota         Thermotogota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;